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- PyMol; A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences; https://www.pymol.org/
![pymol](https://cloud.githubusercontent.com/asset…
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Hi, I'd like to report a security vulnerability in lastest release :
Description: Cross-site scripting (XSS) vulnerability(also execute constructed malicious code)
Date: 2021.05.17
Version: v1.2…
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I'm trying to use this plugin to visualize particles with variable radius, but I'm encountering some trouble setting it up. I'm pasting the instructions you provided in the vmd mailing list at some po…
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Hello,
I'm currently a VMD user looking for better solutions to analyze my simulations
using Python. I found that MDAnalysis is the best way to go! But it lacks some
really important features t…
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re: https://github.com/msmbuilder/msmbuilder/issues/697
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Hi, I am new to molecular docking, and uni-dock works so nicely. Thanks for the great work!
My question is how we usually visualize the input and results in 3D. Is there any good tool or tutorial y…
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There are tools such as VMD and Avogadro which are designed to visualize molecular orbitals and charge densities. Thus, one should be able to use these tools to visualize the 1-RDM output from molecul…
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Hello @powroupi! How are you doing? I congratulate and thank you for all of your excellent work on MMD tools. Can you please add support for the import and export of .vpd (Vocaloid Pose Data) files? M…
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dxli mentioned the desire for some kind of scriptability.
I'd like to hear what thoughts are bouncing around on this topic.
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Multicol files in their current states are great in 1D and 2D because they are read seamlessly by many plotting programs. In 3D they can get quite bulky, and plotting becomes less straightforward anyw…