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I have tried to analyze a video using the Tierpsy Tracker, and it works fine, but when I look at the output file `video_skeletons.hdf5`, all contents of `skeleton` are `nan`. Why is this? I need to us…
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Hi,
I am trying to use your WormPose to analyze the video that contains multiple worms. I first used the Tierpsy to extract the individual worms but I am not sure how to input different worms in the …
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Hello! Thanks for this repository. It looks very cool!
I was trying to run the tutorial notebook on google colab. Didn't change anything, just ran the cells as is, and got as far as the "Set inputs…
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I am trying to reproduce the results in the paper. When constructing the training dataset, I encountered several options
1. dataset from Tierpsy tracker. As indicated in the Implementation part, "We…
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When trying to open a Tierpsy file from the check_dataset notebook, I get the following error:
```
ValueError Traceback (most recent call last)
in ()
16 # opti…
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Thanks a lot for developing wormpose!
We get the `filename.hdf5` and `filename_featureN.hdf5` files from tierpsy software, and then check the data using `check_dataset.ipyb` in WormPose, we find th…
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Thanks a lot for developing wormpose!
When trying out our own dataset in the Tierpsy tracker format, we are stuck in the synthetic image step. The generated image clearly does not look like a worm.…
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I'm going through the WormPose 0.1.15 Tutorial Notebook in Colab (https://github.com/iteal/wormpose/blob/master/examples/tutorial_sample_data.ipynb) using your provided sample_data (https://github.com…