Tierpsy tierpsy-tracker issues

Tierpsy / tierpsy-tracker

Multi-Worm Behaviour Tracker. README here:

https://github.com/Tierpsy/tierpsy-tracker/blob/development/README.md

MIT License

20 stars 18 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Worms do not get skeletonised, all trajectories get filtered in SKE_INIT step

#95 monfort314 opened 3 weeks ago
2
The X11 connection broke (error 1). Did the X11 server die?

#94 tylerkennedy85 closed 4 months ago
1
metaclass conflict

#93 deligkarisk closed 5 months ago
2
packages conflicts in source installation on Windows 11

#92 monfort314 closed 6 months ago
5
Split_fov

#91 asafgat closed 1 year ago
3
Masking seems good but no skeleton

#90 lnicole08 closed 1 year ago
1
x and y coordinates

#89 PradipWEHI closed 1 year ago
4
HDF5 file unable to be created/opened

#88 Jing0283 closed 1 year ago
3
Export cropped images for a single worm

#87 WeiWenKevinChen opened 2 years ago
4
Docker installation doesn't work on windows 10 (requires windows 10 pro)

#86 LadaPechuk opened 2 years ago
3
Comparing /blob_features in *_skeletons.hdf5 and *_featuresN.hdf5

#85 jskat opened 2 years ago
1
Set Parameters crashes after enabling background subtraction

#84 jskat opened 2 years ago
2
Too many worms filtered out

#83 mmaatthieuu opened 2 years ago
4
bugfix race condition in summary writing

#82 luigiferiani closed 2 years ago
0
Skeleton is NaN

#81 JGNieto opened 2 years ago
1
batch processing multiple files step not picking up files in directory

#80 wormtracks opened 2 years ago
6
OSError: [WinError 126] prevents batch processing

#79 jskat closed 2 years ago
4
extracting frequency data from featuresN files

#78 Belharreguy opened 2 years ago
1
Update INSTALLATION_DOCKER.md

#77 JGNieto closed 2 years ago
1
Generalise fovsplitting

#76 luigiferiani closed 2 years ago
0
Can't find Qt platform plugin after install from source

#75 jskat closed 2 years ago
6
Parallel summaries

#74 luigiferiani closed 2 years ago
0
Gui improvement when selecting a results file

#73 luigiferiani closed 3 years ago
0
Cannot extract feature data or view plots (best parameters for low resolution videos?)

#72 willgryan opened 3 years ago
4
Food cnt improvements

#71 luigiferiani closed 3 years ago
0
Trouble Creating Skeletons for Single Worm

#70 nickkel56 closed 3 years ago
4
bug in food detection (morphology route)

#69 luigiferiani closed 3 years ago
0
Viewer gui improvement

#68 luigiferiani closed 3 years ago
0
v1.5.3a: Workflow action for Docker build

#67 luigiferiani closed 3 years ago
0
v1.5.2

#66 luigiferiani closed 3 years ago
0
version bump 1.5.2alpha -> 1.5.2

#65 luigiferiani closed 3 years ago
0
Docker instructions

#64 luigiferiani closed 3 years ago
0
silencing futurewarning tensorflow/numpy

#63 luigiferiani closed 3 years ago
0
On Windows, Tierpsy often hangs after finishing to analyse some videos, does not move on to the next ones

#62 asafgat opened 3 years ago
1
Can't get the boxes after processing

#61 mmaatthieuu closed 3 years ago
2
no bool columns in /timeseries_data in results

#60 luigiferiani closed 3 years ago
0
viewer can now plot the skeletons and contours in the main window

#59 luigiferiani closed 3 years ago
0
trajectory filtering can work without blob_features

#58 luigiferiani closed 3 years ago
0
Getting timestamp from the hdf5 file

#57 loftusa closed 3 years ago
3
myfile_subsample.avi is not produced by gui app

#56 antonkulaga closed 3 years ago
1
installation on linux (ubuntu 18.04)

#55 cooketho closed 3 years ago
0
missing documentation regarding command line use

#54 cooketho closed 3 years ago
1
Questions operating Tierpsy

#53 NeriKafkafi closed 3 years ago
8
Making WCON extraction methods "public" in extractWCON

#52 mwatts15 closed 3 years ago
1
Update README.md

#51 ver228 closed 4 years ago
0
compressVideo.py: bugfix

#50 luigiferiani closed 3 years ago
0
can't get tierpsy tracker to work on mac or pc, possibly can't get good install?

#49 ohaganr closed 3 years ago
4
Improvements to wells masking, new pytorch model

#48 luigiferiani closed 4 years ago
0
bugfix for normalisation of area by worm length

#47 luigiferiani closed 4 years ago
1
docs: added troubleshooting for [WinError 126] in Windows installation without CUDA

#46 luigiferiani closed 4 years ago
0