AI-sandbox neural-admixture issues

AI-sandbox / neural-admixture

Rapid population clustering with autoencoders

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issues

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still getting biallelic error (attempting to use supervised training)

#25 seetarajpara opened 1 month ago
4
after selecting only biallelic SNPs in multi-sample VCF, still getting error "AssertionError: Only biallelic SNPs are supported. Please make sure multiallelic sites have been removed." please advise

#24 seetarajpara closed 1 month ago
8
Installation

#23 Pharmacogenetecist closed 11 months ago
1
TypeError: 'NoneType' object is not iterable

#22 AlexYiLuo closed 11 months ago
1
Bootstrapping

#21 AlbertDominguez opened 1 year ago
0
Weird output

#20 Rosemeis opened 1 year ago
5
CV error

#19 SiddhiJani opened 1 year ago
2
Choosing the optimal K value

#18 yassineS opened 1 year ago
2
Question regarding structure of the input

#17 mchowdh200 closed 1 year ago
1
Error verifying vcf extensions

#16 dasaqui closed 1 year ago
1
AssertionError: Ground truth ancestries needed for supervised mode

#15 Lindo007 closed 1 year ago
2
Unable to install on Mac M1

#14 juanbigotes closed 2 years ago
2
--name issue

#13 gloria0920 closed 2 years ago
2
Update inference.py

#12 gil-i closed 2 years ago
2
Add an option to save the output to a different folder from 'save_dir'.

#11 gil-i opened 2 years ago
1
First stable release

#10 AlbertDominguez closed 2 years ago
0
Error: Ground truth ancestries needed for supervised mode

#9 privefl closed 2 years ago
2
Quite different output compared to ADMIXTURE

#8 privefl closed 1 year ago
2
What to provide as --init_file?

#7 privefl closed 2 years ago
1
SyntaxError: invalid syntax

#6 privefl closed 2 years ago
1
Feat/tsvd-bed-tol

#5 AlbertDominguez closed 3 years ago
0
Feat/pip package

#4 AlbertDominguez closed 3 years ago
0
Feat/inference script

#3 AlbertDominguez closed 3 years ago
0
Addition of several features

#2 AlbertDominguez closed 3 years ago
0
Update README.md

#1 dmasmont closed 3 years ago
0