shellfish_and_algae-MODEL

Data downloading subtask

• command to build docker image: ./miscellaneous/manage.sh build_dataimport
• command to run container from the image created by the command above: ./miscellaneous/manage.sh run_dataimport

Commands to deploy

./miscellaneous/manage.sh build_dataimport
./miscellaneous/manage.sh build_dataread
./miscellaneous/manage.sh build_posttreatment

/miscellaneous/manage.sh bash

Use one of the following commands to access the volume:

• source miscellaneous/manage.sh bash
• . miscellaneous/manage.sh bash

Description of tasks in terms of manual execution step by step in order to debug the pipeline:

step 0: build images

0.1. ./miscellaneous/manage.sh build_dataimport 0.2. ./miscellaneous/manage.sh build_pretreatment 0.3. ./miscellaneous/manage.sh build_dataread 0.4. ./miscellaneous/manage.sh build_datareadshellfish 0.5. ./miscellaneous/manage.sh build_posttreatment 0.6. ./miscellaneous/manage.sh create_volumes 0.7. ./miscellaneous/manage.sh build_farmrepartition

step 1: dataimport

1.0. ./miscellaneous/manage.sh execute_dataimport

step 2: pretreatment

2.0. ./miscellaneous/manage.sh execute_pretreatment

step 3: dataread

Scenario A

3.1. ./miscellaneous/manage.sh execute_dataread

3.2 ./miscellaneous/manage.sh execute_datareadshellfish

step 5: posttreatment

4.1. ./miscellaneous/manage.sh execute_posttreatment