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ASAP-CRN
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harmonized-wf-dev
Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP
Apache License 2.0
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Add tool and library versions in README
#58
kfang4
closed
1 month ago
0
v.1.1 release
#57
ergonyc
opened
1 month ago
4
Feature/data integrity test
#56
kfang4
closed
3 weeks ago
3
Update workflow for v1.0.0 release
#55
ergonyc
opened
2 months ago
1
Feature/update manifest
#54
kfang4
opened
2 months ago
2
Feature/wdl ci
#53
kfang4
closed
2 months ago
0
Output the scib results SVG
#52
kfang4
closed
2 months ago
0
update workflow_diagram
#51
ergonyc
closed
2 months ago
2
Remove old PDFs
#50
kfang4
closed
2 months ago
0
old .pdf files for data dictionary file manifest
#49
ergonyc
closed
2 months ago
1
fix scib_report export bug
#48
kfang4
closed
3 months ago
0
Develop
#47
kfang4
closed
3 months ago
0
Upldate WDL to impliment the simple CI functions
#46
ergonyc
closed
3 months ago
0
Scib artifact metrics
#45
ergonyc
closed
3 months ago
0
add UMAP 1+2 to exported metadata
#44
ergonyc
closed
3 months ago
0
UMAPs needed in metadata
#43
ergonyc
closed
3 months ago
1
Add UMAP to metadata export
#42
ergonyc
closed
4 months ago
1
Feature/unembargoed scherzer
#41
kfang4
closed
4 months ago
0
Feature/staging buckets
#40
kfang4
closed
4 months ago
0
Feature/reduce storage
#39
kfang4
closed
5 months ago
0
Develop
#38
kfang4
closed
5 months ago
0
Feature/optimization
#37
kfang4
closed
6 months ago
0
Feature/update promote staging data script
#36
kfang4
closed
6 months ago
0
Feature/test full cohort
#35
kfang4
closed
6 months ago
0
Feature/test python wf
#34
kfang4
closed
6 months ago
0
Chore/update docs
#33
kfang4
closed
6 months ago
0
Feature/ah test
#32
ergonyc
closed
6 months ago
0
scvi-tools 1.1.0
#31
ergonyc
closed
6 months ago
1
Scanpy implementation
#30
kfang4
closed
6 months ago
0
add resources, process.py clarify
#29
ergonyc
closed
7 months ago
0
Annot stub
#28
ergonyc
closed
7 months ago
0
Update output organization and resource requirements
#27
hkeward
closed
7 months ago
0
Feature/upload to multiple staging buckets
#26
hkeward
closed
8 months ago
0
Bugfix/increase resources
#25
hkeward
closed
8 months ago
0
Feature/write manifest
#24
hkeward
closed
8 months ago
0
Feature/allow multiple fastqs per sample
#23
hkeward
closed
8 months ago
0
Feature/update generate input script
#22
hkeward
closed
9 months ago
0
Stage output data in staging buckets
#21
hkeward
closed
10 months ago
0
fix group plotting legend title bug
#20
ergonyc
closed
11 months ago
0
fix feature plotting bugs.
#19
ergonyc
closed
11 months ago
0
v1.0.0
#18
hkeward
closed
11 months ago
1
Output PNG versions of QC graphs
#17
hkeward
closed
11 months ago
0
Add batch_id column
#16
hkeward
closed
11 months ago
0
Add all intermediate artifacts to the curated buckets
#15
hkeward
closed
11 months ago
0
Ouptut PNG plots in addition to PDFs
#14
hkeward
closed
11 months ago
0
Allow group_by_vars to be configurable by the user
#13
hkeward
closed
11 months ago
0
Only store the latest successful run's data in the curated output bucket
#12
hkeward
closed
11 months ago
0
Remove future from process script
#11
hkeward
closed
11 months ago
0
Allow optional index files to be provided to cellranger
#10
hkeward
closed
11 months ago
0
Enable workflow to run cellranger alone if no batch information is provided
#9
hkeward
closed
11 months ago
0
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