AbigailMcGovern iterseg issues

AbigailMcGovern / iterseg

napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)

BSD 3-Clause "New" or "Revised" License

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issues

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Drag-n-drop of Iterseg-written ome.zarr files is not working

#26 AbigailMcGovern opened 3 months ago
1
Segement_data widget: debug changes

#25 AbigailMcGovern opened 3 months ago
0
UnboundLocalError while running segmentation

#24 raeesahhy opened 4 months ago
1
Consider using tox-gh

#23 matthewfeickert opened 6 months ago
1
Change test matrix to use Py3.10, 3.12

#22 jni closed 6 months ago
3
Update test and deploy workflow

#21 jni closed 6 months ago
0
Preserve also the time scale from the image layers

#20 jni closed 6 months ago
0
Iterseg segment_data saves as ome-zarr directly during segmentation

#19 jni closed 6 months ago
0
Find channel axis

#18 jni closed 6 months ago
1
WIP: adding reader contribution to napari for ome-zarr painting

#17 jni closed 7 months ago
1
commit to remove zarrs from package data

#16 AbigailMcGovern closed 8 months ago
0
numba warning

#15 jni opened 8 months ago
0
Fix unet loading issue

#14 AbigailMcGovern closed 8 months ago
6
patch to read ome zarrs

#13 AbigailMcGovern closed 8 months ago
0
Attempt to fix test workflow

#12 AbigailMcGovern closed 8 months ago
0
Changes to enable PyPI installation

#11 AbigailMcGovern closed 10 months ago
0
Remove need for environment - prepare for PyPI

#10 AbigailMcGovern closed 10 months ago
0
Issue with predicting labels with unet trained on only one frame

#9 AbigailMcGovern opened 10 months ago
0
Example scripts and removal of unnecessary functions

#8 AbigailMcGovern closed 11 months ago
0
August changes to iterseg

#7 AbigailMcGovern closed 1 year ago
0
Sphinx doesn't find decorated functions

#6 AbigailMcGovern opened 1 year ago
0
Add optional GPU support

#5 AbigailMcGovern opened 1 year ago
0
Improve interface for train_from_viewer

#4 AbigailMcGovern opened 1 year ago
0
Predict widget fails at iterseg/._dock_widgets line 444

#3 AbigailMcGovern closed 10 months ago
1
Debugging and improving widgets [WIP]

#2 AbigailMcGovern closed 1 year ago
0
Metrics n predict

#1 AbigailMcGovern closed 1 year ago
0