Description
Faceted search tool to display the data from InterMine database, allowing the users to search easily within the different mines available around InterMine without the requirement of having an extensive knowledge of the data model.
Demo / Preview
You can access the demo in this link.
Quick Links
- Check out the latest deployed version
- Read the latest stable documentation docs
- Set up the project to contribute
Required Ontology Concepts (per mine) for each filter
| Filter | Ontology Concepts |
|---|---|
| GO Annotation | goAnnotation.ontologyTerm.name |
| Dataset Name | dataSets.name |
| Pathway Name | pathways.name |
| Organism short name | Gene.organism.shortName |
| Location | locations.start + locations.end + locations.locatedOn.primaryIdentifier |
| Diseases (OMIM) | diseases.name |
| ClinVar | alleles.clinicalSignificance + alleles.type |
| Protein Localisation | proteinAtlasExpression.cellType + proteinAtlasExpression.tissue.name + proteinAtlasExpression.expressionType + proteinAtlasExpression.level + proteinAtlasExpression.reliability |
| Protein Domain Name | proteins.proteinDomainRegions.proteinDomain.name |
| Interactions | interactions.participant2.symbol + interactions.details.type + interactions.details.dataSets.name |
| Expression | atlasExpression.pValue + atlasExpression.tStatistic + atlasExpression.expression + atlasExpression.dataSets.name |