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Alamar-Biosciences
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NULISAseqR
NULISAseq R package
GNU General Public License v3.0
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Not file in templates and Error in Rmarkdown knit
#148
NikoLichi
opened
5 months ago
15
Vignette/tutorial?
#147
NikoLichi
opened
5 months ago
0
Update NAS deployment
#146
jkkbuddika
closed
9 months ago
0
New qc thresholds
#145
dwightkuo
closed
9 months ago
2
update to include all curve-fit params
#144
dwightkuo
closed
10 months ago
0
API bug fix
#143
jkkbuddika
closed
10 months ago
0
add some rearranging for convenience of AQ data in ExecutionDetails f…
#142
dwightkuo
closed
10 months ago
0
Log2 transform
#141
dwightkuo
closed
10 months ago
0
Fix bug
#140
jkkbuddika
closed
10 months ago
0
make color scheme in QC report consistent with NAS using hcl.color(5,…
#139
dwightkuo
closed
10 months ago
0
fix typo
#138
dwightkuo
closed
10 months ago
0
changes to XML generation for ACC (add interplate normalization to ma…
#137
dwightkuo
closed
10 months ago
0
add progress bar for skeleton.Rmd when generated through shiny, https…
#136
dwightkuo
closed
10 months ago
1
Outlier detection for blank samples using MAD + addition of Callibrator type
#135
dwightkuo
closed
10 months ago
0
change colnames substring index since log2NormalizedCount colname was…
#134
jcbeer
closed
11 months ago
0
Update API
#133
jkkbuddika
closed
11 months ago
0
add force and force_pull arguments to volcanoPlot function for labeling
#132
jcbeer
closed
11 months ago
0
add lmerTest to DESCRIPTION
#131
dwightkuo
closed
11 months ago
0
add lmerTest to libraries
#130
dwightkuo
closed
11 months ago
0
fix NumericCovariate detection, was not correctly detecting NAs when …
#129
dwightkuo
closed
11 months ago
0
Update README.md
#128
jcbeer
closed
11 months ago
0
Very minor readme typo
#127
jaspitzer
closed
11 months ago
1
Fix pandoc error
#126
jkkbuddika
closed
12 months ago
0
add return carriages before and after "---". Was being processed inco…
#125
dwightkuo
closed
1 year ago
0
new QC thresholds
#124
dwightkuo
closed
12 months ago
1
fix skeleton bugs
#123
kalganem
closed
1 year ago
0
Dev jcb
#122
jcbeer
closed
1 year ago
0
update documentation
#121
jcbeer
closed
1 year ago
0
Update API
#119
jkkbuddika
closed
1 year ago
0
swap colors on sample-sample correlation plot
#118
dwightkuo
closed
1 year ago
0
Dev dwight
#117
dwightkuo
closed
1 year ago
0
Update counts endpoint
#116
jkkbuddika
closed
1 year ago
0
add transformation functionality to writeNULISAseq
#115
jcbeer
closed
1 year ago
0
set defaults for loadNULISAseq so that NULL for NC/SC/IPC are the def…
#114
dwightkuo
closed
1 year ago
0
Dev dwight
#113
dwightkuo
closed
1 year ago
0
Add excludeTargets parameter to the API
#112
jkkbuddika
closed
1 year ago
0
Dev jcb
#111
jcbeer
closed
1 year ago
0
change default sampleGroupCovar to SAMPLE_MATRIX
#110
jcbeer
closed
1 year ago
6
add "SC" sample type to QCFlagSample and QCFlagPlate functions
#108
jcbeer
closed
1 year ago
0
fix the detectability table csv output
#107
jcbeer
closed
1 year ago
0
add excludeTargets parameter
#106
Elizzzza
closed
1 year ago
1
create a new list "sampleID" which combines the plateID and the sampl…
#105
dwightkuo
closed
1 year ago
5
rbind only matching column in samples dataframe
#104
jcbeer
closed
1 year ago
0
fix the samples rbind issue that was causing output plots to fail
#103
jcbeer
closed
1 year ago
0
fix bugs in the detectability boxplot by sample group covar output fi…
#102
jcbeer
closed
1 year ago
4
change log2NormalizedCount to NPQ
#101
jcbeer
closed
1 year ago
0
Bug fixes and updates to deployment
#100
jkkbuddika
closed
1 year ago
0
Remove merge conflict remnants
#99
jkkbuddika
closed
1 year ago
0
Update output file directory to match current specification
#98
jkkbuddika
closed
1 year ago
0
Dev dwight
#97
dwightkuo
closed
1 year ago
0
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