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AlexandrovLab
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SigProfilerAssignment
Assignment of known mutational signatures to individual samples and individual somatic mutations
BSD 2-Clause "Simplified" License
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Extract mutations assigned to each SBS signature
#148
itigupta2429
opened
5 days ago
4
median mutation burden per COSMIC signature
#147
eltonjrv
closed
2 weeks ago
4
Problems of uploading segmentation file
#146
xiw588
closed
5 days ago
6
Error while providing path to installed TSB files
#145
pnicolascurie
closed
2 weeks ago
2
some question about exome=true
#143
shenhaizhongdechanrao
closed
3 weeks ago
1
file used to plot following plot
#142
wangzunq
closed
5 days ago
1
shapes (96,86) and (85,) not aligned: 86 (dim 1) != 85 (dim 0)
#141
wangzunq
closed
1 month ago
9
Decompose fit
#140
ishida-md
closed
1 month ago
1
Add Docker Container
#139
mdbarnesUCSD
closed
2 months ago
0
Keyboard Interrupts Ignored
#138
DarioS
closed
2 months ago
1
[Question] Difference between denovo_fit and cosmic_fit
#137
JuseTiZ
closed
2 months ago
1
Is there a way to run SigProfilerAssignment on the Experimental Mutational Signatures?
#136
alexanderchang1
closed
2 months ago
1
cant run through a set of samples
#135
LawrenceH622
closed
2 months ago
12
Unclear Scope
#134
DarioS
closed
2 months ago
5
mouse mutational signatures
#133
MariaCartolano
closed
3 months ago
1
error related to SigProfilerAssignment requires pandas==1.5.3
#132
allaway
closed
4 months ago
4
Development
#131
mdbarnesUCSD
closed
4 months ago
1
SigProfilerAssignment for targeted panels?
#130
MiPSch
closed
4 months ago
1
replace PyPDF2 by pypdf
#129
FelixMoelder
closed
4 months ago
2
incompatibility with conda when importing pyPDF2
#128
FelixMoelder
closed
4 months ago
1
please rerun by setting the flag "collapse_to_SBS96 = False "
#127
YingYa
closed
4 months ago
1
How to generate DBS and ID report?
#126
alexgby
closed
4 months ago
1
U67
#125
mdbarnesUCSD
closed
5 months ago
0
Updates links
#124
mdbarnesUCSD
closed
5 months ago
0
v0.1.5: Add text for stability and mutation count to the de novo signature plots
#123
mdbarnesUCSD
closed
5 months ago
0
SBS signatures with numbers above 96
#122
jasmussen-bcm
closed
5 months ago
4
UnboundLocalError: cannot access local variable 'samples' where it is not associated with a value
#121
merlevede
closed
6 months ago
2
SBS96_Decomposition_Plots.pdf is empty
#120
odoveestrella
closed
6 months ago
1
Exome renormalization seems to miss mutations
#119
pushpa-itagi
closed
7 months ago
4
Tracking SBS probability for individual mutation?
#118
Kdreval
closed
7 months ago
2
U57
#117
MousumyCSE
closed
7 months ago
0
Error: "The context-96 decomposition plots pages were not able to be generated."
#116
thebrownlife
closed
8 months ago
4
v0.1.3: Modify how ndarrays are processed
#115
mdbarnesUCSD
closed
8 months ago
0
v0.1.2: Spa_r_i1
#114
mdbarnesUCSD
closed
8 months ago
0
Add reindex function
#113
mdbarnesUCSD
closed
8 months ago
0
Explanation of "context" parameter
#112
marcus-r-kelly
closed
8 months ago
3
Python Version Issue
#111
hpoisner
closed
9 months ago
2
I108
#110
mdbarnesUCSD
closed
9 months ago
0
Signature decomposition error - negative values
#109
maia-munteanu
closed
8 months ago
4
SV Support Update
#108
mdbarnesUCSD
closed
9 months ago
0
Connection timed out while downloading the ref genome to install.
#107
AngelGarciaDeLaTorreGarcia
closed
9 months ago
3
Cosmic v3.4
#106
mdbarnesUCSD
closed
11 months ago
0
Possible to provide path to existing reference genome data?
#105
sigven
closed
11 months ago
2
a qusetion
#104
shenhaizhongdechanrao
closed
11 months ago
3
Question regarding exclude_signature_subgroups option
#103
sigven
closed
11 months ago
2
How do I get CN signature?
#102
pyuna
closed
11 months ago
6
I99
#101
mdbarnesUCSD
closed
12 months ago
0
Sample data to run?
#100
ytakemon
closed
12 months ago
1
Unable to decompose signatures into COSMIC for SBS192 or SBS384
#99
skeitaa
closed
12 months ago
2
export_probabilities_per_mutation=True doesn't work with exome=True
#98
ImNotaGit
closed
12 months ago
5
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