AlexandrovLab SigProfilerAssignment issues

AlexandrovLab / SigProfilerAssignment

Assignment of known mutational signatures to individual samples and individual somatic mutations

BSD 2-Clause "Simplified" License

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issues

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Extract mutations assigned to each SBS signature

#148 itigupta2429 opened 5 days ago
4
median mutation burden per COSMIC signature

#147 eltonjrv closed 2 weeks ago
4
Problems of uploading segmentation file

#146 xiw588 closed 5 days ago
6
Error while providing path to installed TSB files

#145 pnicolascurie closed 2 weeks ago
2
some question about exome=true

#143 shenhaizhongdechanrao closed 3 weeks ago
1
file used to plot following plot

#142 wangzunq closed 5 days ago
1
shapes (96,86) and (85,) not aligned: 86 (dim 1) != 85 (dim 0)

#141 wangzunq closed 1 month ago
9
Decompose fit

#140 ishida-md closed 1 month ago
1
Add Docker Container

#139 mdbarnesUCSD closed 2 months ago
0
Keyboard Interrupts Ignored

#138 DarioS closed 2 months ago
1
[Question] Difference between denovo_fit and cosmic_fit

#137 JuseTiZ closed 2 months ago
1
Is there a way to run SigProfilerAssignment on the Experimental Mutational Signatures?

#136 alexanderchang1 closed 2 months ago
1
cant run through a set of samples

#135 LawrenceH622 closed 2 months ago
12
Unclear Scope

#134 DarioS closed 2 months ago
5
mouse mutational signatures

#133 MariaCartolano closed 3 months ago
1
error related to SigProfilerAssignment requires pandas==1.5.3

#132 allaway closed 4 months ago
4
Development

#131 mdbarnesUCSD closed 4 months ago
1
SigProfilerAssignment for targeted panels?

#130 MiPSch closed 4 months ago
1
replace PyPDF2 by pypdf

#129 FelixMoelder closed 4 months ago
2
incompatibility with conda when importing pyPDF2

#128 FelixMoelder closed 4 months ago
1
please rerun by setting the flag "collapse_to_SBS96 = False "

#127 YingYa closed 4 months ago
1
How to generate DBS and ID report?

#126 alexgby closed 4 months ago
1
U67

#125 mdbarnesUCSD closed 5 months ago
0
Updates links

#124 mdbarnesUCSD closed 5 months ago
0
v0.1.5: Add text for stability and mutation count to the de novo signature plots

#123 mdbarnesUCSD closed 5 months ago
0
SBS signatures with numbers above 96

#122 jasmussen-bcm closed 5 months ago
4
UnboundLocalError: cannot access local variable 'samples' where it is not associated with a value

#121 merlevede closed 6 months ago
2
SBS96_Decomposition_Plots.pdf is empty

#120 odoveestrella closed 6 months ago
1
Exome renormalization seems to miss mutations

#119 pushpa-itagi closed 7 months ago
4
Tracking SBS probability for individual mutation?

#118 Kdreval closed 7 months ago
2
U57

#117 MousumyCSE closed 7 months ago
0
Error: "The context-96 decomposition plots pages were not able to be generated."

#116 thebrownlife closed 8 months ago
4
v0.1.3: Modify how ndarrays are processed

#115 mdbarnesUCSD closed 8 months ago
0
v0.1.2: Spa_r_i1

#114 mdbarnesUCSD closed 8 months ago
0
Add reindex function

#113 mdbarnesUCSD closed 8 months ago
0
Explanation of "context" parameter

#112 marcus-r-kelly closed 8 months ago
3
Python Version Issue

#111 hpoisner closed 9 months ago
2
I108

#110 mdbarnesUCSD closed 9 months ago
0
Signature decomposition error - negative values

#109 maia-munteanu closed 8 months ago
4
SV Support Update

#108 mdbarnesUCSD closed 9 months ago
0
Connection timed out while downloading the ref genome to install.

#107 AngelGarciaDeLaTorreGarcia closed 9 months ago
3
Cosmic v3.4

#106 mdbarnesUCSD closed 11 months ago
0
Possible to provide path to existing reference genome data?

#105 sigven closed 11 months ago
2
a qusetion

#104 shenhaizhongdechanrao closed 11 months ago
3
Question regarding exclude_signature_subgroups option

#103 sigven closed 11 months ago
2
How do I get CN signature?

#102 pyuna closed 11 months ago
6
I99

#101 mdbarnesUCSD closed 12 months ago
0
Sample data to run?

#100 ytakemon closed 12 months ago
1
Unable to decompose signatures into COSMIC for SBS192 or SBS384

#99 skeitaa closed 12 months ago
2
export_probabilities_per_mutation=True doesn't work with exome=True

#98 ImNotaGit closed 12 months ago
5