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AlexandrovLab
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SigProfilerClusters
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
BSD 2-Clause "Simplified" License
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U69
#31
mdbarnesUCSD
opened
7 hours ago
0
Finding the kataegic mutations using SigProfilerClusters
#30
burcakotlu
closed
1 day ago
1
Error: There are no simulated data present for this project #27
#29
mkazanov
closed
1 month ago
0
Spc vaf update
#28
MousumyCSE
closed
1 month ago
0
Error: There are no simulated data present for this project
#27
mkazanov
closed
3 weeks ago
22
Make VAF support more flexible
#26
lculibrk
closed
1 month ago
1
plot rainfall error
#25
temizna
closed
2 weeks ago
26
Installation problem
#24
mkazanov
closed
5 months ago
5
Errors during multiprocessing
#23
MousumyCSE
closed
8 months ago
1
Error with running SigProfilerClusters after SigProfilerSimulator
#22
kbrar4013
closed
7 months ago
8
Install issue
#21
cutleraging
closed
11 months ago
2
AttributeError: 'numpy.int64' object has no attribute 'bit_length'
#20
cmills2
closed
11 months ago
1
'SigProfilerMatrixGenerator.scripts.SigProfilerMatrixGeneratorFunc' has no attribute 'reference_paths'
#19
christianbosselmann
closed
1 year ago
1
how could the IMD cutoff be evaluated as value 1
#18
phoebe-xin-leung
closed
1 year ago
2
Unable to cluster mutations
#17
aliahhawari
closed
1 year ago
6
Exome argument missing from the wiki documentation
#16
MikeACG
closed
1 year ago
3
issue with using CCFs
#15
timchu90
closed
1 year ago
6
UnboundLocalError: local variable 'matrix_file_suffix' referenced before assignment
#14
fonetto
closed
2 years ago
2
How to tell the Clusters to use the VAF in MAF input?
#13
lincj1994
closed
2 years ago
1
rainfallPlots is missing.
#12
xysj1989
closed
2 years ago
4
Is txt input eligible?
#11
zyh4482
closed
1 year ago
9
Problem with MNV records in Mutect2 VCFs
#10
eallen-bbi
closed
2 years ago
3
FileNotFoundError: [Errno 2] No such file or directory: './Allen_Pat02_ID/output/vcf_files_corrected/cancer_clustered/INDEL/output/ID/cancer_clustered.ID83.all'
#9
shishuo16
closed
2 years ago
6
Program always exits with no logging or error message
#8
eallen-bbi
closed
2 years ago
3
No such file or directory: '.output/simulations/data/imds.pickle'
#7
lincj1994
closed
2 years ago
1
Error: There are no simulated data present for this project.
#6
lincj1994
closed
2 years ago
2
RuntimeError: process associated
#5
shishuo16
closed
2 years ago
2
column to extract VAF when standardVC
#4
ksoyeona
closed
2 years ago
1
How to set parameters to run SigProfilerClusters for INDEL?
#3
YingYa
closed
2 years ago
5
imds_corrected when correction=True and chrom_based=True
#2
ksoyeona
closed
2 years ago
1
some issues when running SigProfilerClusters?
#1
YingYa
closed
2 years ago
1