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AlexsLemonade
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OpenScPCA-nf
A workflow for running OpenScPCA analysis modules
BSD 3-Clause "New" or "Revised" License
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Add nextflow -resume setup on workflow runs
#93
jashapiro
closed
2 weeks ago
0
Allow nextflow -resume on workflow runs
#92
jashapiro
closed
2 weeks ago
0
Update simulation scripts to use new age columns
#91
jashapiro
closed
3 weeks ago
0
Update simulation to use new age columns
#90
jashapiro
closed
3 weeks ago
0
Update default release for august data release
#89
jashapiro
closed
3 weeks ago
0
Port Anndata merge changes from scpca-nf
#88
jashapiro
closed
3 weeks ago
0
Port AnnData format changes from scpca-nf
#87
jashapiro
closed
3 weeks ago
0
mask tokens in logs
#86
jashapiro
closed
1 month ago
1
Wave containers not being pulled
#85
jashapiro
opened
1 month ago
7
Prepare for v0.1.1
#84
jashapiro
closed
1 month ago
0
Create a release: v0.1.1
#83
jashapiro
closed
1 month ago
2
Increase default memory for run_scdblfinder
#82
jashapiro
closed
1 month ago
0
add version numbers for v0.1.0
#81
jashapiro
closed
1 month ago
0
Create a release: v0.1.0
#80
jashapiro
closed
1 month ago
3
Add Issue template for workflow releases
#79
jashapiro
closed
1 month ago
3
Fix S3 upload error
#78
jashapiro
closed
1 month ago
0
set docker images to v0.1.0
#77
jashapiro
closed
1 month ago
0
Set scpcatools docker images to v0.4.0
#76
jashapiro
closed
1 month ago
0
70 Add notes about tags and releases
#75
jashapiro
closed
1 month ago
0
Create an issue template for workflow releases
#74
jashapiro
closed
1 month ago
0
Add docker image tags to all docker images
#73
sjspielman
closed
1 month ago
1
Add doublet detection module
#72
sjspielman
closed
1 month ago
2
Create porting guidelines document
#71
jashapiro
opened
1 month ago
0
Add notes about tags and releases
#70
jashapiro
closed
1 month ago
1
Detect doublets with workflow
#69
sjspielman
closed
1 month ago
13
Add a doublet detection module
#68
sjspielman
closed
1 month ago
0
Always output simulated data to `test/` prefix
#67
jashapiro
closed
1 month ago
0
Simulate script has wrong publish location
#66
jashapiro
closed
1 month ago
0
fix undefined variable in launch script
#65
jashapiro
closed
2 months ago
0
Deploy not running as expected
#64
jashapiro
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#63
pre-commit-ci[bot]
closed
2 months ago
1
Data release version update
#62
jashapiro
closed
2 months ago
0
Add data release as workflow dispatch option
#61
jashapiro
closed
3 months ago
1
Add ability to run workflow on a specific data release
#60
jashapiro
closed
3 months ago
0
Add quotes
#59
jashapiro
closed
3 months ago
0
Add monitoring of OpenScPCA-nf nextflow jobs
#58
jashapiro
closed
3 months ago
0
Use staging buckets by default
#57
jashapiro
closed
3 months ago
0
Remove terraform
#56
jashapiro
closed
3 months ago
0
Use samples as principal workflow elements
#55
jashapiro
closed
3 months ago
2
49 Add filtering to merge module to exclude known failures
#54
jashapiro
closed
3 months ago
0
Use resourceLimits and add test runs
#53
jashapiro
closed
3 months ago
0
Update readme with GHA instructions and more detail
#52
jashapiro
closed
3 months ago
0
Add missing slash to move script shebang
#51
jashapiro
closed
3 months ago
0
Replace`checkMax` with `process.resourceLimits`
#50
jashapiro
closed
3 months ago
1
Add filtering to merge module to exclude known failures
#49
jashapiro
closed
3 months ago
0
Add anndata rearrangement to simulate_sce
#48
jashapiro
closed
3 months ago
0
Add step to convert simulated SCE to AnnData
#47
allyhawkins
closed
3 months ago
4
Add notification of nextflow workflow failure
#46
jashapiro
closed
3 months ago
0
Create initial release tag
#45
jashapiro
closed
3 months ago
1
Add testing/staging output buckets
#44
jashapiro
closed
3 months ago
2
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