AliTV-Perl interface
Build status
Latest build: 
DESCRIPTION
This repository contains two helper scripts for AliTV:
- A perl script
alitv.plto generate input files for AliTV. - A perl script
alitv-filter.plto filter the json input files for AliTV.
⚠️ If your fasta file contains lowercase letters they will be treated as masked by lastz, see issue#152
INSTALLATION
External Requirements:
- perl
- cpanm
- lastz
Install with:
git clone https://github.com/AliTVTeam/AliTV-perl-interface
cpanm --installdeps .CITE
An article about AliTV has been published in PeerJ Computer Science 
Please cite this article if you use AliTV-perl-interface in your project.
Additionally the software in any specific version can be cited via its zenodo doi:
AUTHOR
- Frank Förster foersterfrank@gmx.de
- Markus J. Ankenbrand markus.ankenbrand@uni-wuerzburg.de