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AllenCell
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benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
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Removed FOV info from scripts for image preprocessing
#41
fatwir
closed
3 days ago
0
Add dependencies for image preprocessing to virtual environment and installation instructions
#40
pgarrison
closed
19 hours ago
4
Readme for preprocessing
#39
fatwir
opened
5 days ago
1
File path error for pcna notebook
#38
fatwir
opened
6 days ago
1
Import error for save_pcloud
#37
fatwir
opened
6 days ago
0
Fixed file_path in cellpack.py
#36
fatwir
closed
5 days ago
0
Update README.md
#35
fatwir
closed
5 days ago
1
Replace br/ with src/br/
#34
pgarrison
closed
5 days ago
1
Bugfix: pdm install of pointcloudutils
#33
pgarrison
closed
1 week ago
1
Need to add ipywidgets to the dependencies!
#32
fatwir
opened
1 week ago
0
Fixed the naming for the config files and created a csv logger
#31
fatwir
closed
1 week ago
0
Fix the naming for the config files
#30
fatwir
closed
1 week ago
1
Add pre-installation requirements
#29
pgarrison
closed
1 week ago
1
CYTODL_CONFIG_PATH should be absolute
#28
pgarrison
closed
1 week ago
0
Advanced installation includes the local projects br and pointcloudutils
#27
pgarrison
closed
1 week ago
2
Validate pdm.lock in github action
#26
pgarrison
closed
1 week ago
0
Need to add pip and mesh-to-sdf in the .toml file
#25
fatwir
closed
1 week ago
0
Fix image model configs
#24
fatwir
closed
3 weeks ago
0
Need to remove decoder_res_units
#23
fatwir
closed
3 weeks ago
1
Dont' require write permissions in the data directory
#22
pgarrison
opened
3 weeks ago
0
Instructions should specify working directory to run from
#21
pgarrison
closed
1 week ago
1
Update README.md
#20
fatwir
closed
3 weeks ago
0
Documentation for which cell to start from when using published embeddings
#19
pgarrison
opened
1 month ago
0
Remove ML Flow dependency
#18
pgarrison
closed
1 week ago
2
Write instructions for installing image_preprocessing/pyproject.toml dependencies
#17
pgarrison
opened
1 month ago
3
Pin dependencies matching Ritvik's virtual environment
#16
pgarrison
closed
2 weeks ago
7
Config updates
#15
ritvikvasan
closed
1 month ago
1
PDM updates
#14
fatwir
closed
2 weeks ago
0
Have a second person follow the instructions successfully, without assistance, from original data
#13
pgarrison
opened
1 month ago
1
Elaborate on "Set env variables"
#12
pgarrison
closed
1 week ago
1
Document GPU requirements
#11
pgarrison
closed
1 week ago
0
Document system dependencies
#10
pgarrison
closed
1 week ago
1
Remove code specific to AICS systems
#9
pgarrison
opened
1 month ago
1
Publish pinned dependencies in addition to pyproject.toml
#8
pgarrison
closed
2 weeks ago
2
Have a second person follow the instructions successfully, without assistance, from preprocessed data
#7
pgarrison
opened
1 month ago
0
Instructions for using checkpoints
#6
pgarrison
opened
1 month ago
0
More detailed jupyter notebook instructions
#5
pgarrison
opened
1 month ago
0
Minor README clarifications
#4
pgarrison
opened
1 month ago
0
Document usage of `visualize_pointclouds.ipynb` and `visualize_reconstructions.ipynb`
#3
pgarrison
opened
1 month ago
0
Publish code for supplemental figures
#2
pgarrison
opened
1 month ago
0
Add cellPACK related methods and data
#1
mogres
closed
3 months ago
1