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AllenInstitute / npc_sessions

Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
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644864_2023-02-02 missing probes #48

Closed egmcbride closed 1 year ago

egmcbride commented 1 year ago

644864_2023-02-02 has only probes A, B, and C. It should also have probes E and F.

This was a session in the np-exp directory. I copied it to dynamicrouting, so it's possible it will work now.

bjhardcastle commented 1 year ago

Looks like only Record Node 103/experiment1/recording1 was uploaded. I'll re-upload

bjhardcastle commented 1 year ago

d24daced-4973-466a-9b23-275c7bb64c3e

F skipped by SpikeInterface:

...

Preprocessing recording: experiment1_Record Node 104#Neuropix-PXI-100.ProbeD-AP_recording1
    Duration: 4645.29 s
    Bad channel detection:
        - dead channels - 145
        - noise channels - 118
        - out channels - 0
    More than 50.0% bad channels (263). Skipping further processing for this recording.

Preprocessing recording: experiment1_Record Node 104#Neuropix-PXI-100.ProbeE-AP_recording1
    Duration: 4645.3 s
    Bad channel detection:
        - dead channels - 1
        - noise channels - 0
        - out channels - 5
    Removing 5 out channels
    Removing 1 channels after cmr preprocessing
write_binary_recording with n_jobs = 16 and chunk_size = 30000

Preprocessing recording: experiment1_Record Node 104#Neuropix-PXI-100.ProbeF-AP_recording1
    Duration: 4645.28 s
    Bad channel detection:
        - dead channels - 183
        - noise channels - 152
        - out channels - 0
    More than 50.0% bad channels (335). Skipping further processing for this recording.
bjhardcastle commented 1 year ago

This is fixed now - units available for ABCE