Traceback (most recent call last):
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 269, in make_units_table_from_spike_interface_ks25
_ = future.result()
File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 439, in result
return self.__get_result()
File "/opt/conda/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
File "/opt/conda/lib/python3.9/concurrent/futures/thread.py", line 58, in run
result = self.fn(*self.args, **self.kwargs)
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 188, in _device_helper
df_device_metrics["default_qc"] = spike_interface_data.default_qc(
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/spikeinterface.py", line 400, in default_qc
self.get_correct_path(
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/spikeinterface.py", line 141, in get_correct_path
path = npc_io.from_pathlike("/".join(str(path) for path in path_components))
File "/opt/conda/lib/python3.9/site-packages/npc_io/file_io.py", line 65, in from_pathlike
raise FileNotFoundError(
FileNotFoundError: In attempting to handle a path containing '#', we couldn't find s3://codeocean-s3datasetsbucket-1u41qdg42ur9/39967033-3013-4e55-98a4-39e0ae766f20/curated/experiment1_Record Node 104#Neuropix-PXI-100.ProbeF-AP_recording1/properties/default_qc.npy
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 90, in <module>
main()
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 86, in main
write_sessions_to_cache(**kwargs) # type: ignore[misc, arg-type]
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 75, in write_sessions_to_cache
helper(
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 27, in helper
npc_sessions.write_and_upload_session_nwb(
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/utils/cache.py", line 192, in write_and_upload_session_nwb
path = session.write_nwb_zarr(path=path, metadata_only=metadata_only)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 369, in write_nwb_zarr
nwb = self.nwb if not metadata_only else self.metadata
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 332, in nwb
analysis=self._analysis,
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 750, in _analysis
modules.append(self.all_spike_histograms)
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 2632, in all_spike_histograms
for probe in sorted(set(self.units.electrode_group_name[:])):
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1429, in units
for column in self._units.columns:
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1368, in _units
units=npc_ephys.make_units_table_from_spike_interface_ks25(
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 280, in make_units_table_from_spike_interface_ks25
raise RuntimeError(
RuntimeError: Error fetching units for 702136_2024-03-07 - see original exception above/below
bjhardcastle
commented
4 months ago