22:23:49 | root | INFO | Processing 690706_2023-11-28
22:23:56 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:12 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:12 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:17 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:33 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:41 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
22:24:44 | aind-codeocean-api | INFO | https://codeocean.allenneuraldynamics.org/api/v1/data_assets?query=subject+id%3A+690706&start=0&limit=1000
fetching units: 0%| | 0/6 [00:00<?, ?device/s][A22:24:54 | aiobotocore.credentials | INFO | Found credentials in environment variables.
22:24:54 | aiobotocore.credentials | INFO | Found credentials in environment variables.
22:24:56 | aiobotocore.credentials | INFO | Found credentials in environment variables.
22:24:56 | aiobotocore.credentials | INFO | Found credentials in environment variables.
fetching units: 17%|████▏ | 1/6 [00:02<00:13, 2.77s/device][A
fetching units: 33%|████████▎ | 2/6 [00:08<00:18, 4.63s/device][A
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fetching units: 67%|████████████████▋ | 4/6 [00:10<00:04, 2.06s/device][A
fetching units: 83%|████████████████████▊ | 5/6 [00:10<00:01, 1.47s/device][A
fetching units: 100%|█████████████████████████| 6/6 [00:11<00:00, 1.02s/device][A
fetching units: 100%|█████████████████████████| 6/6 [00:11<00:00, 1.85s/device]
Processing jobs: 27%|██▋ | 28/103 [2:42:50<7:16:11, 348.95s/it]
Traceback (most recent call last):
File "/opt/conda/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/opt/conda/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 90, in <module>
main()
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 86, in main
write_sessions_to_cache(**kwargs) # type: ignore[misc, arg-type]
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 75, in write_sessions_to_cache
helper(
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/scripts/write_sessions_to_nwb.py", line 27, in helper
npc_sessions.write_and_upload_session_nwb(
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/utils/cache.py", line 192, in write_and_upload_session_nwb
path = session.write_nwb_zarr(path=path, metadata_only=metadata_only)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 369, in write_nwb_zarr
nwb = self.nwb if not metadata_only else self.metadata
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 332, in nwb
analysis=self._analysis,
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 750, in _analysis
modules.append(self.all_spike_histograms)
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 2632, in all_spike_histograms
for probe in sorted(set(self.units.electrode_group_name[:])):
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1429, in units
for column in self._units.columns:
File "/opt/conda/lib/python3.9/site-packages/npc_io/cached_property.py", line 78, in __get__
val = self.func(instance)
File "/opt/conda/lib/python3.9/site-packages/npc_sessions/sessions.py", line 1368, in _units
units=npc_ephys.make_units_table_from_spike_interface_ks25(
File "/opt/conda/lib/python3.9/site-packages/npc_ephys/units.py", line 284, in make_units_table_from_spike_interface_ks25
return pd.concat(
File "/opt/conda/lib/python3.9/site-packages/pandas/core/reshape/concat.py", line 382, in concat
op = _Concatenator(
File "/opt/conda/lib/python3.9/site-packages/pandas/core/reshape/concat.py", line 445, in __init__
objs, keys = self._clean_keys_and_objs(objs, keys)
File "/opt/conda/lib/python3.9/site-packages/pandas/core/reshape/concat.py", line 507, in _clean_keys_and_objs
raise ValueError("No objects to concatenate")
ValueError: No objects to concatenate