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AllenInstitute
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scrattch.mapping
Genearlized mapping scripts for RNA-seq and Patch-seq data
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python set up update in zzz
#52
inkarkapen
closed
2 days ago
0
updated readme
#51
inkarkapen
closed
4 days ago
0
updated docker
#50
inkarkapen
closed
4 days ago
0
Reorganized code and modified get precomp stats to take a list
#49
inkarkapen
closed
4 days ago
0
Adding mapmycells (map)
#48
inkarkapen
closed
1 month ago
0
Inkar hann python tutorial
#47
inkarkapen
closed
2 months ago
0
Warning after build mapping directory
#46
xpliu16
opened
3 months ago
0
doi for this repo?
#45
cvanvelt
closed
3 months ago
1
Update VERSIONS.md
#44
UCDNJJ
closed
6 months ago
0
Update README.md
#43
UCDNJJ
closed
6 months ago
0
Update README.md
#42
UCDNJJ
closed
6 months ago
0
Update README.md
#41
UCDNJJ
closed
6 months ago
0
Update README.md
#40
UCDNJJ
closed
6 months ago
0
Inkar added hodge dataset
#39
ikapen-alleninst
closed
6 months ago
0
Update mapping.md
#38
ikapen-alleninst
closed
9 months ago
0
to change the way taking transpose of count matrix and to use the rearranged cl.df
#37
leechangkyu
closed
9 months ago
0
passing taxonomy via h5ad and clean-up individual taxonomy dependent functions
#36
leechangkyu
closed
9 months ago
1
Pull the current main branch into my dev branch
#35
jeremymiller
closed
11 months ago
0
many fixes and additions to make it possible to build taxonomy from h5ad
#34
leechangkyu
closed
11 months ago
0
Human MTG mapping 'cannot open connection" error
#33
ru57y34nn
opened
1 year ago
7
Merging main back to dev_jeremy
#32
jeremymiller
closed
1 year ago
0
rewrite the condition to check empty marker index file
#31
leechangkyu
closed
1 year ago
0
taxonomy_mapping() does not find taxonomy column names when using latest docker image
#30
meghanaturner
opened
1 year ago
12
buildMappingDirectory() bug associated with finding best node in dendrogram for each cell.
#29
UCDNJJ
closed
1 year ago
1
Passing metadata with a single column breaks buildTaxonomy()
#28
UCDNJJ
closed
1 year ago
1
Ck
#27
leechangkyu
closed
1 year ago
1
Major update for patch-seq taxonomies
#26
jeremymiller
closed
1 year ago
2
Merging recent changes from main into dev_jeremy
#25
jeremymiller
closed
1 year ago
0
taxonomyName input to loadTaxonomy not working as expected
#24
scseeman
closed
1 year ago
2
Fix dend saving with buildPatchseqTaxonomy
#23
UCDNJJ
closed
1 year ago
0
writePatchseqMarkers having trouble with matrix rather than anno file inputs
#22
xpliu16
closed
1 year ago
1
fix load
#21
UCDNJJ
closed
1 year ago
1
taxonomy update and p value calculation from zscore
#20
leechangkyu
closed
1 year ago
0
merging new changes from main into dev_jeremy
#19
jeremymiller
closed
1 year ago
0
Add missing files
#18
UCDNJJ
closed
1 year ago
0
overwriting dev_jeremy with main
#17
jeremymiller
closed
1 year ago
0
Update build_patchseq_taxonomy.md
#16
UCDNJJ
closed
1 year ago
0
Dev njj
#15
UCDNJJ
closed
1 year ago
0
Pull recent changes from main to dev_jeremy
#14
jeremymiller
closed
1 year ago
0
Patch-seq mapping tutorial clarification
#13
xpliu16
opened
1 year ago
2
Update README.md
#12
UCDNJJ
closed
1 year ago
0
Dev jeremy
#11
UCDNJJ
closed
1 year ago
0
type check for counts and anno
#10
UCDNJJ
opened
1 year ago
0
standard deviation is zero Warning
#9
scseeman
closed
1 year ago
2
py_to_r warning
#8
scseeman
opened
1 year ago
0
Pulling main to my dev branch for further updating
#7
jeremymiller
closed
1 year ago
0
merge jeremy's changes and update CK mapping
#6
UCDNJJ
closed
1 year ago
0
Patchseq output
#5
UCDNJJ
closed
1 year ago
0
convert to anndata backend, organization
#4
UCDNJJ
closed
1 year ago
1
Dev jeremy
#3
UCDNJJ
closed
1 year ago
0
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