Single-Cell-Perturbations-2023

This repository contains my contribution to the Kaggle Single-Cell Perturbations competition 2023.

The two notebooks should be run in the Docker image:

docker build -t scp .
docker run --gpus all --rm -p 8888:8888 scp
# Then connect to the Jupyter notebook from a browser

A pre-built Docker image is available at https://hub.docker.com/repository/docker/ambrosm1/scp2023.

Hardware requirements:

• Quadro P400 GPU or better
• 16 GByte RAM

Software requirements:

• Docker Desktop
• see Dockerfile
• see data/requirements.txt

See the Kaggle post for more information.