Hi,
When I used runBNG to run denovo mode, there was an error as follow:
ERROR: no align files in alignFolder /home/runBNG_denovo_ref/align
Warning/Error messages:
('warning', 'Could not open file \"/home/runBNG_denovo_ref/align/exppairwise1of171.stdout\" tries=0 exception=[Errno 2] No such file or directory: \'/home/runBNG_denovo_ref/align/exppairwise1of171.stdout\'\n')
The command I ran was: runBNG denovo -t /home/bioSoft/tools/pipeline/Solve3.6_09252020/RefAligner/11442.11643rel/avx/ -s /home/Assembly/tools/pipeline/Solve3.6_09252020/ -b 01.runBNG_merged/runBNG_merged.bnx -T 80 -j 20 -z 1300 -o /home/runBNG_denovo_ref -r genome_DLE1_20kb_5labels.cmap -B 0 -P saphyr -l 100 -m 5 -a 1
I run denovo mode with the merge bnx file, the error also appeared. what is the matter? Could you help me to solve this problem? Thank you very much!
wang
Hi, When I used runBNG to run denovo mode, there was an error as follow: ERROR: no align files in alignFolder /home/runBNG_denovo_ref/align Warning/Error messages: ('warning', 'Could not open file \"/home/runBNG_denovo_ref/align/exppairwise1of171.stdout\" tries=0 exception=[Errno 2] No such file or directory: \'/home/runBNG_denovo_ref/align/exppairwise1of171.stdout\'\n')
The command I ran was: runBNG denovo -t /home/bioSoft/tools/pipeline/Solve3.6_09252020/RefAligner/11442.11643rel/avx/ -s /home/Assembly/tools/pipeline/Solve3.6_09252020/ -b 01.runBNG_merged/runBNG_merged.bnx -T 80 -j 20 -z 1300 -o /home/runBNG_denovo_ref -r genome_DLE1_20kb_5labels.cmap -B 0 -P saphyr -l 100 -m 5 -a 1
I run denovo mode with the merge bnx file, the error also appeared. what is the matter? Could you help me to solve this problem? Thank you very much! wang