runBNG compare does not generate .xmap, _q.cmap and _r.cmap

AppliedBioinformatics / runBNG

An easy way to run BioNano genomic analysis

MIT License

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runBNG compare does not generate .xmap, _q.cmap and _r.cmap #36

Open Julia-zhulinying opened 2 years ago

Julia-zhulinying commented 2 years ago

Hello! When using runBNG to align the de novo assembled cmap to the reference cmap (hg38), the output is not the trio files: .xmap, _q.cmap and _r.cmap, but the output is only a .stdout file. I need the trio files. Please help! Thanks!