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Arcadia-Science
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2023-amblyomma-americanum-txome-assembly
MIT License
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update readme
#19
taylorreiter
closed
5 months ago
0
quick PR to add contribution section to README
#18
taylorreiter
closed
8 months ago
0
Add rules to output short contigs that are otherwise filtered
#17
taylorreiter
closed
8 months ago
0
Make metadata and trinity params configurable; minor input fix
#16
giladmishne
closed
8 months ago
0
add dedicated busco rule
#15
taylorreiter
closed
9 months ago
0
test methods to prioritize inclusion of isoseq transcripts
#14
taylorreiter
closed
10 months ago
0
Add more rules for evaluation & annotation
#13
taylorreiter
closed
10 months ago
0
Renames output folders so outputs are better organized by section of pipeline that produces them
#12
taylorreiter
closed
10 months ago
0
Add code to predict open reading frames
#11
taylorreiter
closed
10 months ago
2
Remove code for single end support
#10
taylorreiter
closed
10 months ago
0
Screen for contamination in final transcriptome
#9
taylorreiter
closed
10 months ago
1
removal of samples petx96sgfemale and petx120sgfemale due to transrate failure from too few contigs/mapped reads
#8
taylorreiter
opened
10 months ago
0
Figuring out assembly groups & transcriptome merging
#7
taylorreiter
opened
10 months ago
3
rules for adding in isoseq data
#6
taylorreiter
closed
10 months ago
0
Try otherfuser transcriptome deduplication approach
#5
taylorreiter
closed
10 months ago
0
Add rules for grouper, a method for isoform/fragment grouping based on read mapping
#4
taylorreiter
closed
5 months ago
1
Add rules for assembly
#3
taylorreiter
closed
11 months ago
0
Add rules for quality control of sequences
#2
taylorreiter
closed
11 months ago
0
Start a pipeline for creating a de novo txome from the A americanum publicly available RNAseq data
#1
taylorreiter
closed
11 months ago
0