issues
search
Arcadia-Science
/
glial-origins
Evolutionary origins and relationships of glial cell types
MIT License
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
apc update
#56
mezarque
closed
1 year ago
1
Including a Google Colab notebook
#55
mezarque
closed
1 year ago
2
Pub Revision
#54
mezarque
closed
1 year ago
2
Code review
#53
mertcelebi
opened
1 year ago
3
Update new-species branch with changes from main
#52
mezarque
closed
1 year ago
1
Tidy up mkdocs directories
#51
mezarque
opened
1 year ago
0
Import BioFile and associated functions with alias
#50
mezarque
opened
1 year ago
0
Remake Conda Envs
#49
mezarque
opened
1 year ago
1
Revised BioFile handling.
#48
mezarque
closed
1 year ago
1
Add documentation using docstrings
#47
mezarque
closed
1 year ago
1
Consider using logging instead of print
#46
mezarque
opened
1 year ago
1
Refactor BioFile to remove SampleDicts
#45
mezarque
closed
1 year ago
1
How to BioFileHandle Multiple input files?
#44
jasegehring
closed
1 year ago
2
Input functions for BioFile handling
#43
jasegehring
opened
1 year ago
1
Progress messages for add_keyfiles command; other slow steps
#42
jasegehring
closed
1 year ago
2
common name feature in the BioFileDocket
#41
jasegehring
closed
1 year ago
2
get_from_url needs a valid exception
#40
jasegehring
closed
1 year ago
2
Write generalized functions for handling FS vs OG data
#39
mezarque
closed
1 year ago
1
Add file handling to MultiSpeciesBioFileDocket classes
#38
mezarque
closed
1 year ago
1
Annotation pull/ overlay and Sankey diagrams, plus minor other adds
#37
mezarque
closed
1 year ago
2
Make sankey diagrams into functions
#36
mezarque
opened
1 year ago
0
hotfix to allow unpickling from s3
#35
mezarque
closed
1 year ago
0
Updated "in media res" version of notebooks following PR#27
#34
mezarque
closed
1 year ago
1
S3 Sync
#33
mezarque
closed
1 year ago
2
check to make sure OrthoFinder files are actually uploaded
#32
mezarque
closed
1 year ago
1
highlight variable regions that people can or should change
#31
mezarque
opened
1 year ago
0
label parts of setup.md where it's Cloud9-specific
#30
mezarque
opened
1 year ago
0
Add descriptions to top of each notebook of what is happening
#29
mezarque
opened
1 year ago
0
Write notebooks to get cell annotations
#28
mezarque
closed
1 year ago
1
"in media res" versions of notebooks
#27
mezarque
closed
1 year ago
4
Build "in media res" versions of notebooks
#26
mezarque
closed
1 year ago
3
Single-species scanpy visualizations and DE gene list export
#25
mezarque
closed
1 year ago
9
Cross-species mixing tools
#24
mezarque
opened
1 year ago
0
GO enrichment of genes in each cluster
#23
mezarque
opened
1 year ago
0
Annotation transfer and assessment tools
#22
mezarque
opened
1 year ago
0
Structure preservation statistical methods
#21
mezarque
opened
1 year ago
0
Built transcriptome-only or proteome-only download pipelines
#20
mezarque
opened
1 year ago
0
Figure out why there are duplicate Orthogroups and how to manage that
#19
mezarque
opened
1 year ago
2
Reconfigure computed class attributes as @property functions
#18
mezarque
closed
1 year ago
1
Auto-generate output/ folder if it doesn't exist
#17
mezarque
closed
1 year ago
1
image generator
#16
mezarque
opened
1 year ago
1
Scripts for running OrthoFinder
#15
mezarque
closed
1 year ago
1
Update license to MIT
#14
mertcelebi
closed
1 year ago
1
Update README to describe BioFile handling and using dill to pickle
#13
mezarque
closed
1 year ago
1
Rename Docket class to BioFileDocket
#12
mezarque
closed
1 year ago
1
Methods for pickling and unpickling Dockets
#11
mezarque
closed
1 year ago
1
Don't generate file if it already exists
#10
mezarque
closed
1 year ago
1
Sankey diagram of id mapping, data retention, and embeddings
#9
mezarque
opened
1 year ago
1
Build functions for database operations
#8
mezarque
closed
1 year ago
1
Record sep or other pandas load arguments in gxc biofile and gff/gtf biofile objects
#7
mezarque
opened
1 year ago
1
Next