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AshleyLab / risk_scores

LD Pred risk scores for afib
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Validation data #15

Open jackosullivanoxford opened 5 years ago

jackosullivanoxford commented 5 years ago

After the best ldpred score has been determined, either test the score on validation data (split UKBB data? MVP?) or cross-validation in R

jackosullivanoxford commented 5 years ago

Can have access to TOPMED data via Sowmi

jackosullivanoxford commented 5 years ago

When the validation data is set, consider running Step 1 again and including the command vbim. vbim is a set of validation SNPs that are shared between, in our case, GWAS SS, UKBB and TOPMED.