Do you have to use different phenotype data in step3 of ldpred to logistic regression?

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LD Pred risk scores for afib

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Do you have to use different phenotype data in step3 of ldpred to logistic regression? #20

Open jackosullivanoxford opened 4 years ago

jackosullivanoxford commented 4 years ago

Answer: Step 3 does not require a phenotype file: It doesn't validate the scores with a phenotype file, it simply calculates the score (allele dosage x beta of SNP)