AstrobioMike bit issues

AstrobioMike / bit

Bioinformatics Tools

GNU General Public License v3.0

81 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[Metagenomics wf] put in check some bins were recovered prior to running checkm2

#26 AstrobioMike opened 3 months ago
0
[Metagenomics wf] capture and report proportion of reads represented by MAGs for each sample

#25 AstrobioMike opened 3 months ago
2
[Metagenomics wf] capture and report MAG coverage across samples

#24 AstrobioMike opened 3 months ago
0
[Metagenomics wf] add option to skip contig and gene-level taxonomy (so just binning/MAG recovery)

#23 AstrobioMike opened 3 months ago
0
add option to set seed for bit-mutate-seqs

#22 AstrobioMike closed 3 months ago
1
bit-summarize-assembly when same assembly name but different path

#21 AstrobioMike closed 3 months ago
1
add program for downloading test data

#20 AstrobioMike closed 5 months ago
1
add option to bypass doing MAG recovery from metagenomics workflow

#19 AstrobioMike closed 5 months ago
1
[Metagenomics wf] Add option to run bbnorm

#18 AstrobioMike opened 5 months ago
0
Create documentation for workflows

#17 AstrobioMike closed 4 months ago
1
Update bit-combine-bracken-and-add-lineage to allow users to pass a custom location for the taxonkit database

#16 sterrettJD closed 11 months ago
1
Feature request - Ability to download gene nucleotide sequences when using `bit-dl-ncbi-assemblies`

#15 Sidduppal closed 1 year ago
4
ImportError: No module named pandas

#14 laibinhuang closed 1 year ago
5
Conda install takes >30 min in clean enviorment

#13 joshuakirsch closed 1 year ago
5
More species that it was before

#12 mfreidin1975 closed 1 year ago
1
Indentation Error in bit-dl-ncbi-assemblies

#11 emilhaegglund closed 2 years ago
1
Example bracken combining outputs and adding lineage info

#10 laibinhuang closed 2 years ago
2
taxid not found when using bit/bit-kraken2-to-taxon-summaries

#9 laibinhuang closed 2 years ago
2
Feature request: download any accession

#8 bkille closed 3 years ago
2
Add files via upload (bit-genbank-to-gene-seqs.py)

#7 Arkadiy-Garber opened 3 years ago
0
gzip downloads are malformatted

#6 bkille closed 3 years ago
3
Create LICENSE

#5 AstrobioMike closed 3 years ago
0
Conda bit python requirements

#4 genignored closed 3 years ago
1
Batch downloading fasta files from a list of Accession#

#3 kwnamhang closed 4 years ago
7
Update README.md

#2 AstrobioMike closed 8 years ago
0
Update README.md

#1 AstrobioMike closed 8 years ago
0