AuReMe mpwt issues - Githubissues

AuReMe / mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).

GNU Lesser General Public License v3.0

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I found a new modeling problem.

#89 ChenCongZ closed 1 month ago
1
/mpwt/pwt_wrapper.py: ['Error', 'fatal error', 'No protein-coding genes with sequence data found.', 'Cannot continue.']

#88 Alexander20mc opened 7 months ago
3
I have created dozens of genome files and this situation has occurred. How can I solve it.

#87 ChenCongZ closed 1 month ago
4
When I use pathway tools to build models, this problem always appears: Fatal error: The search using the name of your rganism ("Caloramator Bacteria, Firmicutes, Clostridia, Clostridiales, Caloramator." strain=NIL) failed to find any Taxon class for your organism or returned ambiguous results.

#86 ChenCongZ closed 1 year ago
2
Mpwt 0.8.2

#85 ArnaudBelcour closed 1 year ago
0
Error when launching mpwt

#84 lcottret closed 1 year ago
2
Pathway Tools is not in the Path, mpwt can not work without it.

#83 ChenCongZ closed 1 year ago
23
Mpwt 0.8.0

#82 ArnaudBelcour closed 2 years ago
0
Issue mpwt delete and ptools cache ?

#81 lcottret closed 2 years ago
3
issue when there is an extra file in the input folder

#80 lcottret closed 1 year ago
1
bypass the genetic-elements.dat and organisms.dat creation

#79 lcottret closed 1 year ago
4
Mpwt 0.7.2

#78 ArnaudBelcour closed 2 years ago
0
Pathway-tools 26.0 handles gbff and gff without input files.

#77 ArnaudBelcour opened 2 years ago
0
Use -dump-flat-files-biopax to create flat files (Pathway-Tools 26.0).

#76 ArnaudBelcour closed 2 years ago
1
Add an option to use -complex-inference (Pathway-Tools 26.0).

#75 ArnaudBelcour closed 2 years ago
1
Mpwt 0.7.1

#74 ArnaudBelcour closed 2 years ago
0
Issue mpwt with the --hf option

#73 Kisekya closed 2 years ago
1
Mpwt 0.7.0

#72 ArnaudBelcour closed 2 years ago
0
Issue with Pathway Tools 25.5 when checking log

#71 DafniGi closed 2 years ago
2
String not Boolean and path incorrect

#70 AsaLap closed 2 years ago
2
Add an option to give various Pathway Tools option to mpwt.

#69 ArnaudBelcour opened 3 years ago
1
Make each run of Pathway Tools independent.

#68 ArnaudBelcour closed 2 years ago
2
Issue with Pathway Tools 25.0 when checking log.

#67 ArnaudBelcour closed 3 years ago
1
Issue with encoding of flat_files_creation.log.

#66 ArnaudBelcour closed 3 years ago
1
mpwt 0.6.1

#65 ArnaudBelcour closed 3 years ago
0
mpwt 0.6.0

#64 ArnaudBelcour closed 3 years ago
0
mpwt move output files should be more flexible.

#63 ArnaudBelcour closed 3 years ago
1
mpwt 0.5.9

#62 ArnaudBelcour closed 4 years ago
0
Error when trying to create dat files without input folder.

#61 ArnaudBelcour closed 4 years ago
2
Refactor how paths are handled.

#60 ArnaudBelcour closed 4 years ago
1
Add __version__ to mpwt.

#59 ArnaudBelcour closed 4 years ago
1
mpwt 0.5.8

#58 ArnaudBelcour closed 4 years ago
0
Pop-up showing after attribute-value files creations.

#57 ArnaudBelcour closed 4 years ago
1
Encoding issues when creating terminal logs.

#56 ArnaudBelcour closed 4 years ago
1
mpwt 0.5.7

#55 ArnaudBelcour closed 4 years ago
0
PathoLogic error can occur after PGDB creation.

#54 ArnaudBelcour closed 4 years ago
1
Add an option to use Transporter Inference Parser with Pathologic.

#53 ArnaudBelcour closed 4 years ago
1
No join and close of Pool if an error occurred.

#52 ArnaudBelcour closed 4 years ago
1
Replace Pool map by starmap.

#51 ArnaudBelcour closed 4 years ago
1
mpwt 0.5.6

#50 ArnaudBelcour closed 4 years ago
0
Add a check to delete unfinished PathoLogic build.

#49 ArnaudBelcour closed 4 years ago
1
mpwt 0.5.5

#48 ArnaudBelcour closed 4 years ago
0
Add support for .fsa extension.

#47 ArnaudBelcour closed 4 years ago
1
--md should not be used without -o

#46 ArnaudBelcour closed 4 years ago
1
Add a license to the project

#45 cfrioux closed 4 years ago
0
Add a --version option to mpwt

#44 cfrioux closed 4 years ago
1
Mpwt 0.5.4

#43 ArnaudBelcour closed 4 years ago
0
Add an argument to select pathway prediction score.

#42 ArnaudBelcour closed 4 years ago
2
mpwt --dat kills pathway-tools command if there is a non-fatal error

#41 ArnaudBelcour closed 4 years ago
1
Add error message when there is multiple input files.

#40 ArnaudBelcour closed 4 years ago
1