ATGM Infrastructure in Ansible

These playbooks manage our machines and define what software needs to be setup and ensures everything stays updated.

Setup

After you've cloned the repository, you'll need to install Ansible

virtualenv .venv
. .venv/bin/activate
pip install -r requirements.txt

You'll need to get the .vault_password file from Helena, which is used to decrypt the secrets.

Running the playbook

make

Infrastructure

Service	Infrastructure Provider	Notes
Erebor	BML	Filebrowser
Isengard	BML	Student accounts
Midgard	BML	Sequencing projects & fast5 will be kept with SNELLIUS basecalling / Student
Asgard	BML	Intern Machine / Teachers
145.48.6.40	DIF	Galaxy Test Server, we deploy here simultaneously (or use it really for testing if we like.)
145.48.6.41	DIF	Galaxy Production Server
145.48.6.42	DIF	Cocalc

user account policy

discussion to be finialised.

backup storage policy

Project accounts of students will get an directory called data_storage.
Everything in this directory will be backed up in other machines. this directory should contain:

Input data.
pipelines (scripts and galaxy workflows).
remove fast5 files once basecalling protocol is satisfying.

Backup frequency is every friday 20:00 till sunday 20:00.