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BBQuercus
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deepBlink
Threshold independent detection and localization of diffraction-limited spots.
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab546/6312733
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Benchmark of DetNet and spotlearn
#151
wikk-chy
closed
1 year ago
2
CPU / GPU configuration - 3D spot detection jupyter notebook
#150
Boehmin
opened
1 year ago
1
deepblink model
#146
wikk-chy
closed
1 year ago
6
Prepare for release 0.1.4
#145
BBQuercus
closed
1 year ago
1
TrackMate output file changes
#144
BBQuercus
closed
2 years ago
1
Comparison between deepBlink and spotlearn
#143
imzhangyd
closed
1 year ago
1
tiff images not allowed in predict
#142
sosuts
closed
2 years ago
2
Intensity and radius bug
#141
BBQuercus
closed
2 years ago
1
Error when using both probability and radius parameters
#140
nickeener
closed
2 years ago
3
Release 0.1.3
#139
BBQuercus
closed
2 years ago
1
What's the training data of your pretrained model?
#137
imzhangyd
closed
2 years ago
4
Scale pixel size predict
#136
BBQuercus
closed
2 years ago
1
Scale pixel size in deepblink create
#135
BBQuercus
closed
2 years ago
1
CLI submodule visualize
#134
BBQuercus
closed
2 years ago
1
How to fine-tune with my custom data?
#133
tamasbalassa
closed
2 years ago
16
Release 0.1.2
#132
BBQuercus
closed
2 years ago
1
New models and trackmate version support
#131
BBQuercus
closed
2 years ago
1
[training data loading] to adapte csvs exported from Trackmate v7.0.0+
#130
BioinfoTongLI
closed
2 years ago
3
Optimization for large images?
#129
BioinfoTongLI
closed
3 years ago
5
Create QOL
#128
BBQuercus
closed
3 years ago
1
Pre training
#127
BBQuercus
closed
3 years ago
1
Fix bugs in 3d prediction notebook example
#126
zhanyinx
closed
3 years ago
1
Creation of npz dataset file fails
#125
mimuelle
closed
3 years ago
2
Add 3D prediction example notebook
#124
BBQuercus
closed
3 years ago
1
Reminder: No test data.
#123
BBQuercus
closed
3 years ago
1
Example notebooks
#122
BBQuercus
closed
3 years ago
1
Timeout and intensity
#121
BBQuercus
closed
3 years ago
1
Calling deepblink from jupyter notebook
#120
mimuelle
closed
3 years ago
3
Prediction output
#119
BBQuercus
closed
3 years ago
1
prediction probability in the output
#118
alcrevenna
closed
3 years ago
8
Prediction of non-square images
#117
BBQuercus
closed
3 years ago
0
Add twitter and PyPI downloads in README
#116
BBQuercus
closed
3 years ago
1
Add citation to README!
#115
BBQuercus
closed
3 years ago
1
Release 0.1!
#114
BBQuercus
closed
3 years ago
1
Bumpversion, new images, bugfix
#112
BBQuercus
closed
3 years ago
1
Raw configuration
#111
BBQuercus
closed
3 years ago
1
Add gaussian localization benchmark
#110
zhanyinx
closed
3 years ago
1
Network bugs
#109
BBQuercus
closed
3 years ago
1
Pre release 0.1.0 / Patch 0.0.7
#108
BBQuercus
closed
3 years ago
1
ValueError: Unknown activation function:leaky_relu
#107
resace3
closed
3 years ago
9
Add models.txt for deepBlink download
#106
BBQuercus
closed
3 years ago
1
Final adjustments
#105
zhanyinx
closed
3 years ago
1
Final inception architecture
#104
zhanyinx
closed
3 years ago
1
Qol improvements
#103
zhanyinx
closed
3 years ago
1
📰 Add TrackMate labelling image
#102
BBQuercus
closed
3 years ago
1
Small fixes
#101
zhanyinx
closed
3 years ago
1
Move train argument description to yaml config
#100
zhanyinx
closed
3 years ago
1
Wandb logging
#99
BBQuercus
closed
3 years ago
1
⬆️ Bump tensorflow from 2.2.0 to 2.2.1
#98
dependabot[bot]
closed
4 years ago
1
Improve test coverage
#97
BBQuercus
closed
4 years ago
2
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