issues
search
BD2KGenomics
/
protect
Apache License 2.0
28
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Problem running Dockerized protect / where to find SSE-C key for downloading reference data?
#294
anttikos
opened
3 years ago
4
Error when using Dockerized PHLAT
#293
rbowenj
opened
3 years ago
0
Updated to python3
#292
drkthomp
opened
3 years ago
4
Python3 adaptation
#291
drkthomp
opened
3 years ago
1
numerically sort positions in vcfs
#290
arkal
opened
6 years ago
2
Dont fail if transgene finds zero actionable mutations (resolves #214)
#289
davidstew
opened
6 years ago
0
Add fusion filters for transgene (resolves #237)
#288
arkal
opened
6 years ago
2
providing fusion.bedpe is not compatible with snv calling
#287
arkal
closed
6 years ago
1
Allow user to specify majority
#286
arkal
opened
6 years ago
0
Fix event with inconsistency in normals with many IARS(resolves #284)
#285
arkal
closed
6 years ago
0
Do not fail if >1 IARS and not all have no normal seq
#284
arkal
closed
6 years ago
0
Add mix and match functionality for mutation calling (resolves #265)
#283
davidstew
opened
6 years ago
0
Export transgene fusions (resolves #281)
#282
arkal
closed
6 years ago
0
Transgene does not export fusions
#281
arkal
closed
6 years ago
0
Cherry pick from master
#280
arkal
closed
6 years ago
0
Add memory requirement to DNA alignment (resolves #278)
#279
arkal
closed
6 years ago
0
Add memory requirements for DNA alignment DAG
#278
arkal
closed
6 years ago
0
Add troubleshooting to MANUAL.md (resolves #274)
#277
arkal
closed
6 years ago
0
Transfer license to UCSC CGL (resolves #272)
#276
arkal
closed
6 years ago
0
Make saving logs (if possible) a univ_option
#275
arkal
opened
6 years ago
0
Add troubleshooting section to the manual
#274
davidstew
closed
6 years ago
0
Create LICENSE and move old license to the attic (Resolves #271)
#273
arkal
closed
6 years ago
0
Transfer license to UCSC CGL
#272
arkal
closed
6 years ago
0
Add github compatible license
#271
arkal
closed
6 years ago
0
Add Github compatible license
#270
arkal
closed
6 years ago
0
Allow choice of pMHC predictors
#269
davidstew
opened
6 years ago
0
test new docker files
#268
davidstew
closed
6 years ago
5
Fix the setuptools code so that the correct names are used (resolves #266)
#267
swp930
closed
6 years ago
2
Fix setuptools issue
#266
arkal
closed
6 years ago
0
Allow mix and match of mutation callers
#265
arkal
opened
6 years ago
0
Make section in manual on contributions
#264
arkal
opened
6 years ago
0
change the logging messages so that they occur after events (resolves #254)
#263
davidstew
closed
6 years ago
1
Update flowchart to show that indels and fusions are implemented (resolves #258)
#262
swp930
closed
6 years ago
3
Update make-prepare to install toil 3.8.0 (resolves #260)
#261
davidstew
closed
6 years ago
3
Update toil in make prepare to 3.8.0
#260
arkal
closed
6 years ago
0
This commit will modify the logging for after-the-event (resolves [ticket # 254])
#259
swp930
closed
6 years ago
3
Update flowchart
#258
arkal
closed
6 years ago
0
Add better support for ProTECT-your-way (resolves #256)
#257
arkal
closed
6 years ago
1
Better support for ProTECT-your-way
#256
arkal
closed
6 years ago
0
Ensure resource requirements are provided for EACH job
#255
arkal
opened
6 years ago
0
modify all logging to be after-the-event
#254
arkal
closed
6 years ago
0
Better help with Protect --help
#253
arkal
opened
6 years ago
0
Show example
#252
arkal
closed
6 years ago
0
Fix toil in setup.py (resolves #250)
#251
arkal
closed
6 years ago
0
Fix toil in setup.py
#250
arkal
closed
6 years ago
0
Consider MHCFlurry
#249
arkal
opened
6 years ago
0
Citable reference
#248
schelhorn
opened
6 years ago
2
Consider DeepMHC
#247
arkal
opened
6 years ago
0
Diagnose "Removal In Progress" Errors with MHCI dockers
#246
arkal
closed
6 years ago
1
Diagnose "Removal In Progress
#245
arkal
opened
6 years ago
0
Next