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BICCN / cell-locator

manually align specimens to annotated 3D spaces
https://cell-locator.readthedocs.io
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Re-factor functions related to LIMS support #130

Closed jcfr closed 4 years ago

jcfr commented 4 years ago

loadLIMSSpecimen -> fetchAnnotationFromLIMS

def fetchAnnotationFromLIMS(self, limsBaseURL, specimenID):
  [...]
  return body['data']['data']

Originally posted by @jcfr in https://github.com/BICCN/cell-locator/pull/128

saveLIMSSpecimen -> publishAnnotationToLIMS

def saveLIMSSpecimen(self, limsBaseURL, annotationNode, specimenID):
    [...]

Originally posted by @jcfr in https://github.com/BICCN/cell-locator/pull/128