BICCN / cell-locator

manually align specimens to annotated 3D spaces
https://cell-locator.readthedocs.io
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3d-slicer-custom-application allen-brain-atlas biccn itk mni-atlas vtk

CellLocator by Allen Institute

Cell Locator is a free, open source and multi-platform pinning tool to facilitate mapping samples into common 3D spaces.

It is a desktop application based on 3D Slicer that displays the Allen Institute for Brain Science CCF or MNI atlas, color segmented by structure of the brain, and allows a user to create a planar polyline annotation to facilitate mapping samples into the corresponding atlas.

To get started, see https://cell-locator.readthedocs.io

Acknowledgments

To cite Cell Locator or learn about the funding sources, see https://cell-locator.readthedocs.io/en/latest/acknowledgments.html

License

This software is licensed under the terms of the BSD-3-Clause open-source license. See the LICENSE file for details.