BICCN / cell-locator

manually align specimens to annotated 3D spaces
https://cell-locator.readthedocs.io
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Cell Locator is displaying MNI in non-standard views #163

Closed lydiang closed 3 years ago

lydiang commented 3 years ago

Environment

Windows 10

Description

When pinning Human samples, it is important to show MNI in the standards view so that users/anatomists are able to efficiently navigate to the position they need to go to.

Currently, Cell Locator shows MNI in non-standard views.

Expected behavior

This is an example of "standard" representation view for human data (left to right: coronal, sagittal, axial)

image (Image from https://neurosynth.org/)

How to Reproduce

  1. Start the application using command line : "C:\Users\lydia\AppData\Local\Allen Institute\CellLocator 0.1.0-2020-09-18\CellLocator.exe" --atlas-type mni
  2. Then change "reference view" dropdown ("Axial", "Coronal", "Sagittal")
  3. Cell Locator shows non-standard views:

Coronal: image

Sagittal: image

Horizontal: image