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BIH-CEI
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ERKER2Phenopackets
A pipeline of ERKER data into the phenopackets data structure.
MIT License
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reconfigure pipeline.py to transfer all phenotypes
#188
aslgraefe
opened
8 months ago
0
182 Phenopacket distance algorithm
#187
frehburg
closed
9 months ago
0
extract genotype and phenotype specifics
#186
frehburg
opened
10 months ago
0
ML Analysis MC4R
#185
frehburg
opened
11 months ago
4
Actually exclude phenotypic features tagged as excluded
#184
frehburg
opened
11 months ago
0
reading from file
#183
frehburg
closed
11 months ago
0
Phenopacket distance algorithm
#182
frehburg
closed
9 months ago
3
add module to load in phenopackets from file
#181
frehburg
closed
11 months ago
0
Bug in protobuf, upgrade to `>= 3.20.2`
#180
frehburg
opened
11 months ago
0
Bump protobuf from 3.20.1 to 3.20.2
#179
dependabot[bot]
closed
11 months ago
1
Cannot determine variant coordinate from genomic interpretation
#178
frehburg
closed
11 months ago
8
177 added decorator to trace method args, start and finish
#177
frehburg
closed
11 months ago
0
171 add a utils function that gets the path of the folder of laste created phenopackets and use it in analysis
#176
frehburg
closed
11 months ago
0
Decorator method trace
#175
frehburg
closed
11 months ago
0
MC4R Analysis with genophenocorr
#174
frehburg
opened
11 months ago
1
online documentation
#173
frehburg
opened
11 months ago
0
154 Try out genophenotool from monarch
#172
frehburg
closed
11 months ago
0
add a utils function that gets the path of the folder of laste created phenopackets and use it in analysis
#171
frehburg
closed
11 months ago
0
Update README.md
#170
frehburg
closed
11 months ago
0
142 Clean up code
#169
frehburg
closed
11 months ago
0
165 fix more validation errors
#168
aslgraefe
closed
11 months ago
1
added `cleardir` command to empty the out directories
#167
frehburg
closed
11 months ago
1
updated `validate` functionality and included it in `pipeline` as `-v` tag
#166
frehburg
closed
11 months ago
0
Fix more validation errors
#165
frehburg
closed
11 months ago
4
debugged pipeline
#164
frehburg
closed
11 months ago
1
add `cleardir` command
#163
frehburg
closed
11 months ago
0
test phenopacket creating
#162
aslgraefe
closed
11 months ago
1
153 update erker v17 to fix zygosity
#161
aslgraefe
closed
11 months ago
0
add `help` command
#160
frehburg
opened
11 months ago
1
151 possible to call pipeline with flags
#159
frehburg
closed
11 months ago
1
rewrite `validate` command using `argparse`
#158
frehburg
closed
11 months ago
0
remove .DS_Store file
#157
frehburg
closed
11 months ago
0
activating multithreading
#156
frehburg
closed
11 months ago
0
Remove .DS_Store file
#155
frehburg
closed
11 months ago
0
Try out genophenotool from monarch
#154
frehburg
closed
11 months ago
0
update ERKER_v1.7 to fix zygosity
#153
aslgraefe
closed
11 months ago
0
HGVS String in parentheses
#152
frehburg
closed
11 months ago
1
Make it possible to call pipeline with flags
#151
frehburg
closed
11 months ago
0
Fixed validation errors phenopackets
#150
frehburg
closed
11 months ago
2
fixing badge in readme 2: double github.com
#149
frehburg
closed
11 months ago
1
Debug `validate` command
#148
frehburg
closed
11 months ago
0
fixing badge in readme
#147
frehburg
closed
11 months ago
0
125 daniels comments
#146
aslgraefe
closed
11 months ago
1
Fix errors that validation throws
#145
frehburg
closed
11 months ago
1
130 add phenopacket validation
#144
frehburg
closed
12 months ago
0
137 update zygosity mapping to include all possible zygosities
#143
aslgraefe
closed
12 months ago
0
Clean up code
#142
frehburg
closed
11 months ago
0
138 add new synthdata and new phenopackets from synthdata
#141
aslgraefe
closed
12 months ago
0
removed pipeline notebook
#140
frehburg
closed
12 months ago
0
remove notebook
#139
frehburg
closed
12 months ago
0
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