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BIH-CEI
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rarelink
RareLink - A Rare Disease Interoperability Framework in REDCap to enable Registry Use, HL7 FHIR, and the GA4GH Phenopacket Schema
https://rarelink.readthedocs.io/en/latest/index.html
MIT License
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workflows and tests
#73
aslgraefe
opened
3 days ago
0
Redcap installation
#72
aslgraefe
closed
5 days ago
0
Aslgraefe patch 1
#71
aslgraefe
closed
5 days ago
0
installation of REDCap forms (repeatable, connecting BioPortal, etc.)
#70
aslgraefe
closed
5 days ago
0
upon update from Phenopacket Mapper
#69
aslgraefe
opened
1 week ago
0
Fix
#68
aslgraefe
closed
1 week ago
0
update data dictionary
#67
aslgraefe
closed
1 week ago
0
61 change code systems for data model
#66
aslgraefe
closed
1 week ago
0
only allow one choice for multiple fields
#65
aslgraefe
closed
1 week ago
0
Allow repeating rows for repeating elements in redcap
#64
frehburg
opened
1 week ago
1
Add files via upload
#63
aslgraefe
closed
1 week ago
0
Update README.md
#62
aslgraefe
closed
1 week ago
0
change code systems for data model
#61
aslgraefe
closed
1 week ago
0
57 implement data model
#60
aslgraefe
closed
1 week ago
0
fix
#59
aslgraefe
closed
1 week ago
0
changes
#58
aslgraefe
closed
1 week ago
0
implement data model
#57
aslgraefe
closed
1 week ago
0
uncommented a few lines
#56
frehburg
closed
1 week ago
0
merge phenopacket_mapper data loading into this repo
#55
frehburg
closed
1 week ago
0
Add test
#54
aslgraefe
closed
1 week ago
1
51 add project structure for pheno pipeline
#53
frehburg
closed
1 week ago
0
create specific api requests for each code system (ORPHA, MONDO, etc)
#52
frehburg
opened
1 week ago
0
add project structure for pheno pipeline
#51
frehburg
closed
1 week ago
0
pipelines/phenopacket_pipeline
#50
frehburg
opened
1 week ago
0
preprocessing module
#49
frehburg
closed
1 week ago
1
47 change python version to 310
#48
frehburg
closed
1 week ago
0
change python version to 3.10
#47
frehburg
closed
1 week ago
0
implement codings instead of redcap code strings in notebook
#46
frehburg
closed
1 week ago
1
removed ontobridge as submodule
#45
frehburg
closed
1 week ago
0
fix ci
#44
frehburg
closed
1 week ago
0
42 replicate erdri csd notebook with rarelink rd cdm
#43
aslgraefe
closed
2 weeks ago
0
replicate erdri-csd notebook with RareLink RD CDM
#42
aslgraefe
closed
2 weeks ago
0
40 fix formatting introduction
#41
aslgraefe
closed
2 weeks ago
0
fix formatting introduction
#40
aslgraefe
closed
2 weeks ago
0
38 docs general implementation background and usage of framework
#39
aslgraefe
closed
2 weeks ago
0
Docs: introduction
#38
aslgraefe
closed
2 weeks ago
0
RareLink/toFHIR documentation
#37
aslgraefe
opened
2 weeks ago
0
toFHIR execution & config file
#36
aslgraefe
opened
2 weeks ago
0
IPS-FHIR Mappings
#35
aslgraefe
opened
2 weeks ago
0
Phenopacket Mapper Documentation
#34
aslgraefe
opened
2 weeks ago
0
Extension around RareLink's core
#33
aslgraefe
opened
2 weeks ago
0
RD CDM in Phenopacket Mapper
#32
aslgraefe
opened
2 weeks ago
0
Implement Phenopacket Pipeline
#31
aslgraefe
opened
2 weeks ago
0
Ceienr phenopacket extension
#30
aslgraefe
closed
2 weeks ago
0
Add ontobridge
#29
aslgraefe
closed
3 weeks ago
0
5) Scripts for Post-Processing and Quality Check
#28
aslgraefe
closed
1 week ago
1
4) Create SPARQL Endpoint for Queries
#27
aslgraefe
closed
1 week ago
1
3) Map Local Model Ontology to RD CDM Ontology
#26
aslgraefe
closed
1 week ago
1
2) Model RD CDM v2.0 in an Ontology
#25
aslgraefe
closed
1 week ago
1
1) Set Up MySQL Database
#24
aslgraefe
closed
1 week ago
1
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