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BIMIB-DISCo
/
TRONCO
Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
https://bimib-disco.github.io/TRONCO
GNU General Public License v3.0
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tronco.plot expand = F -- visualization error with hypotheses
#84
caravagn
closed
6 years ago
0
assignments in global environment and no visible binding for '<<-' assignment to 'value'
#83
rdiaz02
closed
7 years ago
0
Add support for other tools (PicNiC)
#82
caravagn
closed
6 years ago
0
Development
#81
luca-dex
closed
7 years ago
0
keysToNames crash?
#80
caravagn
closed
8 years ago
1
gridArrange error?
#79
caravagn
closed
8 years ago
1
PICNIC/COADREAD crashes at step 5, statistics, line 115.
#78
caravagn
closed
8 years ago
1
Consistency frequency in Oncoprint and progression model
#77
danro9685
closed
8 years ago
0
Experimental on development
#76
luca-dex
closed
8 years ago
1
consolidate.data with error rates
#75
danro9685
closed
6 years ago
0
options(stringsAsFactors = FALSE) breaks TRONCO
#74
rdiaz02
closed
7 years ago
1
Remove cluster/creation destruction from within functions (and use makeForkCluster in POSIX systems)
#73
rdiaz02
closed
6 years ago
1
handle indistinguishable events
#72
danro9685
closed
8 years ago
0
as.selective.advantage.relations does nothing with caprese models
#71
rdiaz02
closed
8 years ago
2
as.kfold.posterr returns a data frame with all columns as characters
#70
rdiaz02
closed
8 years ago
1
testthat update
#69
luca-dex
closed
8 years ago
0
Development
#68
luca-dex
closed
8 years ago
0
Development
#67
luca-dex
closed
8 years ago
0
Development
#66
luca-dex
closed
8 years ago
0
Development
#65
luca-dex
closed
8 years ago
0
Development
#64
luca-dex
closed
8 years ago
0
Development
#63
luca-dex
closed
8 years ago
0
Development
#62
luca-dex
closed
8 years ago
0
env are evil
#61
luca-dex
closed
8 years ago
0
oncoprint / show.patterns = T
#60
caravagn
closed
6 years ago
0
Development
#59
luca-dex
closed
8 years ago
0
Development
#58
luca-dex
closed
8 years ago
0
Error: Possible regularization are bic or aic
#57
danro9685
closed
8 years ago
1
remove oncoprint return
#56
luca-dex
closed
8 years ago
1
pathways @ tronco.plot --> samples.annotation
#55
caravagn
closed
6 years ago
0
Development
#54
luca-dex
closed
8 years ago
0
tronco.plot warning when an invalid model is selected
#53
danro9685
closed
8 years ago
0
tronco.plot + samples annotatation
#52
caravagn
closed
8 years ago
2
tronco.plot + samples annotatation
#51
caravagn
closed
8 years ago
0
change none in no reg
#50
luca-dex
closed
8 years ago
0
oncoprint + annotate.consolidate.events = T
#49
caravagn
closed
8 years ago
0
remove do.estimation
#48
luca-dex
closed
8 years ago
1
date update
#47
luca-dex
closed
8 years ago
0
numbering correction
#46
luca-dex
closed
8 years ago
0
Development
#45
luca-dex
closed
8 years ago
0
Dev cleanup
#44
luca-dex
closed
8 years ago
0
No edge in adjacency matrix! Nothing to show here.
#43
PoisonAlien
closed
8 years ago
5
Fix issues
#42
luca-dex
closed
9 years ago
0
tronco.plot & caprese
#41
luca-dex
closed
9 years ago
0
enforce numeric
#40
luca-dex
closed
9 years ago
0
Visualization
#39
danro9685
closed
9 years ago
0
Manual to be finalized
#38
danro9685
closed
9 years ago
0
bugfix bic-aic edges
#37
luca-dex
closed
9 years ago
0
fixed and improved consolidate.data issue #32
#36
danro9685
closed
9 years ago
0
Development -> master
#35
luca-dex
closed
9 years ago
0
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