environment error - Githubissues

BIMSBbioinfo / bavaria

Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets

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environment error #4

Open yingyuan830 opened 2 years ago

yingyuan830 commented 2 years ago

Hi, when I run the 01_pbmc_integration.ipynb of the tutorial, it shows this error during training the model, do you think it is because of the version of packages ? I used pip install . to install the requirements.txt, then pip install protobuf==3.20.1, pip install numpy==1.19.5 to debug the error, but it still can't work. Do you have suggestions about this? Or share a worked env ? Thanks!

wkopp commented 2 years ago

Hi, this is merely a warning message that you can ignore. Best