BIOP ijp-imagetoatlas issues

BIOP / ijp-imagetoatlas

2D sections to 3D atlas registration with Fiji and QuPath

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issues

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Big refactoring of registration plugins

#204 NicoKiaru closed 1 week ago
0
Bug: spline -> move -> edit last registration gives black image

#203 NicoKiaru closed 1 month ago
0
Test and document macro recordability

#202 NicoKiaru opened 1 month ago
0
Caching QuPath project is problematic

#201 NicoKiaru opened 1 month ago
0
Avoid allowing to import QuPath project with a 0 spacing

#200 NicoKiaru closed 1 month ago
0
Remove all overlap modes except the good one (and make sure the bug where it's badly updated is fixed)

#199 NicoKiaru closed 1 month ago
3
Installation error on Mac

#198 NicoKiaru opened 2 months ago
1
Very annoying GUI bug in Mac M1/2/3

#197 NicoKiaru opened 2 months ago
2
Make sure the BiGWarp BC settings are proper taken from ABBA

#196 NicoKiaru closed 1 month ago
2
Raster deformation field not working in BW adapted version 9.1.2

#195 NicoKiaru opened 3 months ago
1
Put gslides in documentation

#194 NicoKiaru closed 1 month ago
1
Give a warning in multichannel registration

#193 NicoKiaru closed 1 month ago
0
A search engine in the documentation...

#192 NicoKiaru closed 1 month ago
1
Error using ABBA using Installation via Windows Installer

#191 Sarruedi opened 5 months ago
13
Test https://github.com/voxelmorph/voxelmorph

#190 NicoKiaru opened 5 months ago
0
Center visible / invisible icons

#189 NicoKiaru closed 1 month ago
0
Ensure brainglobe rat atlas coordinate and original rat atlas coordinates are working with DeepSlice

#188 NicoKiaru closed 5 months ago
1
Change eye icons to make them compatible with a dark background

#187 NicoKiaru closed 5 months ago
1
Improves support of white background image

#186 NicoKiaru opened 5 months ago
0
Put QuPath path in an horizontal scroll pane

#185 NicoKiaru closed 6 months ago
1
Add a way to split the sections from a single image

#184 NicoKiaru opened 6 months ago
6
BigWarp transformation is not maintain when the slice is moved

#183 NicoKiaru closed 7 months ago
1
Add drag and drop support

#182 NicoKiaru closed 7 months ago
0
Update URL for abba_python in the docs

#181 imagejan closed 7 months ago
0
Is ABBA - ask for help in the forum broken ?

#180 NicoKiaru closed 7 months ago
1
Registration history and editability

#179 bmi-lsym closed 8 months ago
6
Expose DeepSlice registration options in the Command

#178 NicoKiaru closed 5 months ago
3
BigWarp 9.0.0 coming

#177 bogovicj closed 1 month ago
9
Position of atlas acronyms decoupled from atlas borders

#176 bgbeekly closed 7 months ago
2
Add Brainways Auto-registration method

#175 NicoKiaru opened 9 months ago
0
Copy registration sequence from one slice and apply it to others

#174 penguingiraffe2 closed 6 months ago
5
Task not removed when loading state fails

#173 NicoKiaru closed 7 months ago
0
Export to Qupath with images imported directly

#172 GuillaumeLeGoc opened 12 months ago
3
ABBA not compatible with elastix 5.1.0

#171 GuillaumeLeGoc opened 1 year ago
4
Neuropixels probe tract registration

#170 AthiemoneZero closed 1 year ago
3
Split the behavior of saving and loading *_bdv_view.json files into their own methods

#169 Etherian closed 7 months ago
4
Data for ABBA

#168 portarttart closed 7 months ago
5
Problem with QuPath region import and mirror/unmirror

#167 NicoKiaru closed 1 year ago
0
Fail to insatll ABBA extension

#166 AthiemoneZero opened 1 year ago
2
Black edge / small area of slice for deepslice

#165 NicoKiaru opened 1 year ago
1
Prevent users from sending oversaturated images in DeepSlice

#164 NicoKiaru opened 1 year ago
1
GUI Improvement

#163 NicoKiaru opened 1 year ago
0
Abba-Python

#162 NicoKiaru closed 1 year ago
1
JAXB error with Rat Atlas and abba-python

#161 NicoKiaru closed 1 year ago
1
Interpreting the alignment transformations

#160 cxrodgers closed 1 year ago
7
Adds a new action labelling the starting point of a saved state

#159 NicoKiaru opened 1 year ago
0
"Load atlas annotations" only loads one annotation

#158 Rodgers-PAC-Lab closed 1 year ago
3
Submit some modification to script installation of abba install

#157 hedjour closed 1 year ago
4
Annotations in QuPath are overlapping and hard to read

#156 cxrodgers closed 1 year ago
3
Registration not really removed, even after 'remove last registration'

#155 NicoKiaru closed 1 month ago
15