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BRCAChallenge
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literature-search
Crawl and annotate pubmed articles with variants
https://brcaexchange.org/
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will need to remove hack around bug in pubMunch
#23
diekhans
opened
5 years ago
0
requirements updates to work with latest packages
#22
diekhans
closed
5 years ago
0
Switch to using beta list of variants
#21
rcurrie
closed
5 years ago
3
Dockerized version and initial command line
#20
rcurrie
closed
5 years ago
0
Merge to master now that we're running off mainline pubMunch
#19
rcurrie
closed
5 years ago
0
Add basic unit test
#18
rcurrie
closed
5 years ago
1
Finish dockerization toward running monthly
#17
rcurrie
closed
5 years ago
0
Debug why 7545954 is downloaded but not converted or found
#16
rcurrie
opened
5 years ago
0
Increase rank/points for hits in the title or abstract vs. body
#15
rcurrie
opened
5 years ago
0
Running List of False Positives
#14
amycoffin
opened
5 years ago
2
Rank papers based on the quality of match
#13
rcurrie
closed
5 years ago
5
Update literature.json structure to support ranking by points
#12
rcurrie
closed
5 years ago
7
Add date of crawl to literature.json for display in website
#11
rcurrie
closed
5 years ago
1
Debug missing founder mutation articles by variant reported from user
#10
rcurrie
closed
5 years ago
10
Compare output of crawler to LOVD truth set
#9
rcurrie
closed
5 years ago
57
Manual QC of papers that are downloaded but fail to generate any mentions
#8
rcurrie
closed
5 years ago
22
Some articles missing year
#7
rcurrie
closed
5 years ago
1
Make crawler aware of retractions
#6
strbean
opened
5 years ago
0
Major update
#5
strbean
closed
5 years ago
0
Track what papers are available freely on PMC
#4
strbean
closed
5 years ago
1
Progress and time tracking
#3
strbean
closed
5 years ago
0
Unit Testing
#2
strbean
closed
5 years ago
1
Per-publisher crawl success stats
#1
strbean
closed
5 years ago
1