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BeNeuroLab
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beneuro_experimental_data_organization
Code for checking, moving, and processing the data recorded in the lab
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Update neuroconv and add kilosort templates
#77
martinesparza
closed
23 minutes ago
2
Create custom channel map option
#76
martinesparza
opened
2 days ago
0
Change naming system to provide session only
#75
martinesparza
opened
2 days ago
2
Generate an interactive script to load profile information and update for each session
#74
martinesparza
opened
2 days ago
0
Camera naming convention too strict
#73
martinesparza
opened
2 days ago
2
Add kilosort templates to nwb
#72
martinesparza
closed
1 day ago
1
Configure black, isort, ruff
#71
bagibence
closed
4 days ago
0
Change anipose h5 to csv
#70
martinesparza
closed
4 days ago
4
updated upload/download to handle kilosort output
#69
gen21kawa
opened
1 week ago
1
Fix time units in NWB conversion
#68
bagibence
opened
2 weeks ago
0
Documentation on pytest file creation error
#67
martinesparza
closed
2 weeks ago
0
Add spike sorting readme section and some warnings
#66
bagibence
closed
2 weeks ago
0
Feature/sorting cli
#65
martinesparza
opened
2 weeks ago
0
Feature/sorting cli
#64
martinesparza
closed
2 weeks ago
0
Uploading ephys error
#63
CeciliaGallego
closed
1 week ago
4
remove unnecessary error
#62
AtMostafa
closed
1 month ago
6
module not found error
#61
AtMostafa
closed
1 month ago
3
Simplify CLI
#60
AtMostafa
closed
1 month ago
0
Update spikeinterface and docker, add workflow to test with processing dependencies installed
#59
bagibence
closed
1 month ago
0
Bump certifi from 2024.6.2 to 2024.7.4
#58
dependabot[bot]
closed
2 months ago
0
Update spikeinterface to 0.100.8
#57
bagibence
closed
2 months ago
0
Download session
#56
bagibence
closed
6 months ago
0
Run tests on Python 3.12, too
#55
bagibence
closed
6 months ago
0
Simplify upload
#54
bagibence
closed
6 months ago
0
Add some docstrings
#53
bagibence
closed
6 months ago
0
Uploading session with missing files to RDS
#52
CeciliaGallego
closed
1 week ago
2
Prompt user what to include when uploading
#51
bagibence
closed
7 months ago
0
Explicitly add python-dotenv as a dependency
#50
bagibence
closed
7 months ago
0
Only import spike sorting dependencies if needed
#49
bagibence
closed
7 months ago
0
upload not working
#48
AtMostafa
closed
7 months ago
1
Kilosort CLI command
#47
bagibence
closed
7 months ago
0
Organize raw data into subfolders?
#46
bagibence
opened
7 months ago
1
downloading
#45
AtMostafa
closed
7 months ago
1
Run poetry install on update
#44
bagibence
closed
7 months ago
0
bnd show-config shows where the source code is
#43
bagibence
closed
7 months ago
0
upload last n session
#42
AtMostafa
opened
7 months ago
0
ERRORS in upload-last
#41
AtMostafa
closed
6 months ago
10
Preprocess data and convert to NWB
#40
bagibence
closed
5 months ago
0
Add CLI command bnd check-updates
#39
bagibence
closed
7 months ago
0
Whitelist channel_map.txt and trajectory.txt, improve pycontrol file finding
#38
bagibence
closed
7 months ago
0
Downgrade to pydantic v1 for compatibility with neuroconv
#37
bagibence
closed
8 months ago
0
Add CLI command to check for updates
#36
bagibence
closed
7 months ago
0
Set --rename-videos to mirror --include-videos by default
#35
bagibence
closed
9 months ago
0
Rename videos by default only when they are also uploaded
#34
bagibence
closed
9 months ago
0
Automatically rename videos
#33
bagibence
closed
9 months ago
0
Automatically rename videos when uploading a session?
#32
bagibence
closed
9 months ago
5
Add tests for the CLI commands
#31
bagibence
opened
9 months ago
0
Rename and upload txts
#30
bagibence
closed
9 months ago
0
Split CLI commands into separate .py files
#29
bagibence
opened
9 months ago
0
Add `list-today` and `validate-today`
#28
bagibence
closed
9 months ago
0
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