BenoitMorel ParGenes issues

BenoitMorel / ParGenes

A massively parallel tool for model selection and tree inference on thousands of genes

GNU General Public License v3.0

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issues

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last character parsing issue

#75 sav-che opened 3 months ago
0
compilation issue

#74 karthickbrlab opened 4 months ago
11
Add ASTER support for species-tree reconstruction

#73 nylander closed 7 months ago
0
export.py is missing

#72 sav-che closed 7 months ago
2
ParGenes run failed

#71 leke-lyu closed 2 years ago
4
Optimizing branch length with fixed tree topology

#70 LipengKang closed 3 years ago
2
ASTRAL Test Failure

#69 LilithMary closed 3 years ago
5
Feature suggestion: add usage of astral-mp

#68 nylander closed 3 years ago
4
Not an issue just a question/request

#67 herber4 opened 3 years ago
3
error: thread-local storage is not supported for the current target

#66 probstrodolfo closed 4 years ago
2
Feature request: Add `--version` option

#65 nylander closed 4 years ago
2
Invalid taxon labels causes division by zero during parse run

#64 pierrebarbera closed 4 years ago
5
Not reading MPI

#63 tdnavarrom closed 4 years ago
5
Conda package for ParGenes

#62 dansondergaard closed 3 years ago
18
Tags for newer versions

#61 tardigradus closed 4 years ago
4
Error parsing the cmd

#60 weedcentipede closed 5 years ago
4
make -j 40

#59 brantfaircloth closed 5 years ago
3
Error w/ MPIScheduler Build

#58 brantfaircloth closed 5 years ago
3
Check the seed behavior

#57 BenoitMorel closed 4 years ago
0
ModelTest step failing with many cores (unspecified error)

#56 brantfaircloth closed 5 years ago
5
Implement some raxml default behaviors

#55 BenoitMorel closed 4 years ago
0
cores?

#54 mcfaddenlab closed 5 years ago
2
Cloning astral is very long

#53 BenoitMorel closed 4 years ago
0
ParGenes run failed

#52 GideonPisanty closed 5 years ago
3
Do not prefix ALL pargenes log with "error:pargenes:"

#51 BenoitMorel closed 6 years ago
0
Add specific error message when most of the parsing commands failed

#50 BenoitMorel closed 6 years ago
1
Handle better the case were the user forgets to specify raxml model

#49 BenoitMorel closed 5 years ago
2
Port pargenes to python2

#48 BenoitMorel closed 6 years ago
0
Add a more generic way of specifying the list of input MSAs

#47 BenoitMorel closed 4 years ago
0
[Error] <class 'OSError'> [Errno 5] Input/output error

#46 BenoitMorel closed 5 years ago
1
OpenMP: redirect jobs stderr to files

#45 BenoitMorel closed 5 years ago
1
Split modeltest jobs per partition

#44 BenoitMorel closed 5 years ago
1
Create per-job result directory only when the job started

#43 BenoitMorel closed 6 years ago
1
Openmp: killing pargenes does not kill the running children jobs

#42 BenoitMorel closed 5 years ago
1
Do not require an input model when -m enabled

#41 BenoitMorel closed 6 years ago
0
Add a seed parameter

#40 BenoitMorel closed 6 years ago
0
Travis enhancements

#39 BenoitMorel closed 6 years ago
0
Improve wiki

#38 BenoitMorel closed 6 years ago
0
Output file structure

#37 BenoitMorel closed 6 years ago
1
Improve logs

#36 BenoitMorel closed 6 years ago
0
Improve checkpoint system

#35 BenoitMorel closed 6 years ago
0
Scheduler: add an implementation based on a thread pools

#34 BenoitMorel closed 6 years ago
1
OpenMP implementation: log redirection not working

#33 BenoitMorel closed 6 years ago
2
Model-test compilation broken

#32 BenoitMorel closed 6 years ago
0
Scheduler: add a summary of failed commands

#31 BenoitMorel closed 6 years ago
0
Add an OpenMP implementation

#30 BenoitMorel closed 6 years ago
0
Add a dry-run option

#29 BenoitMorel closed 6 years ago
0
Do not duplicate phy files much than needed

#28 BenoitMorel closed 6 years ago
0
Missing concatenated bootstraps files when running with a lot of cores

#27 BenoitMorel closed 6 years ago
0
Add more logs in the scheduler

#26 BenoitMorel closed 6 years ago
1