search

BershteynLab / EMODAnalyzeR

Home of package used to load, aggregate, analyze, and visualize outputs from batches of EMOD simulations
2 stars 0 forks source link

readme

codecov

EMODAnalyzeR

EMODAnalyzeR seeks to share, scale, document, and test common research code. This package intends to help members of the Bershteyn Lab and anyone using EMOD-HIV analyze results of emod. This package was developed by members of the Bershteyn lab and Edinah Mudimu.

View Documentation Here

Installation

  1. Make sure you are running R 4.2 or greater
  2. Make sure you have devtools installed (if not, run install.packages("devtools") )
  3. Run library(devtools)
  4. Run install_github("BershteynLab/EMODAnalyzeR")

Usage

library(EMODAnalyzeR)
data = read.simulation.results(<path to runscenarios output folder>, 'Baseline', c("Infected", "Population"), min_age_inclusive = 15, max_age_inclusive = 49)
plot.prevalence(data, 2000, 2040)