hap.py required by Haplotype_Comparison.sh is missing

Bgi-LUSH / LUSH-DNASeq-pipeline

Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits

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hap.py required by Haplotype_Comparison.sh is missing #5

Open avdanurag opened 6 months ago

avdanurag commented 6 months ago

Dear LUSH team,

Thank you for creating this much-needed faster implementation for variant calling.

I wanted to validate the accuracy of the vcf generated by LUSH-DNAseq-pipeline using Haplotype_Comparison.sh. However hap.py script required by Haplotype_Comparison.sh is missing. Can you please provide the same?

Cheers,

Anurag

Bgi-LUSH commented 6 months ago

Hi, hap.py is an open-source tool that you can find at https://github.com/Illumina/hap.py. The version we used for evaluation was v0.3.14.

avdanurag commented 6 months ago

Thank you for prompt response.