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Bgi-LUSH / LUSH-DNASeq-pipeline

Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits
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Update please all files! #7

Open denisgrouzdev opened 9 months ago

denisgrouzdev commented 9 months ago

Colleagues, please verify the deposited files. The LUSH_toolkit-HC is not functioning post-update. The documentation is outdated (for instance, the file name in the new version has changed from 'lush_hc' to 'lush-hc'). Please execute the example files with the existing scripts to ensure they are operating correctly.

Bgi-LUSH commented 9 months ago

Hi, thank you for using LUSH_toolkit. We have updated LUSH_hc to version 2.1.2. Starting from LUSH_hc 2.0, the variant calling modules now uses the 'HaplotypeCaller' subcommand, allowing LUSH_hc to be compatible with more sub-functional blocks. The relevant commands and instructions have been modified throughout the repository files. Thank you for using and providing feedback. Please feel free to contact us if you have any questions.