I am trying to run "genotypegvcfs" for externally generated "gvcf" but I get the following error :
/softwares/LUSH-DNASeq-pipeline/bin/LUSH_toolkit-GenotypeGVCFs/lush_genotypegvcfs combined_Scaffold.1.g.vcf.gz combined_Scaffold.1.vcf-raw2.gz 30
LUSH_GenotypeGVCFs VERSION [LUSH_toolkit-GenotypeGVCFs-V1.1.0][1.1.0.24]
gvcf file is the compressed file.
gvcf file open success.
headlines:60
vcf file is the compressed file.
vcf file open success.
terminate called after throwing an instance of 'std::invalid_argument'
what(): stoi
Aborted (core dumped)
I would appreciate your help in overcoming this issue.
Hi,
I am trying to run "genotypegvcfs" for externally generated "gvcf" but I get the following error :
/softwares/LUSH-DNASeq-pipeline/bin/LUSH_toolkit-GenotypeGVCFs/lush_genotypegvcfs combined_Scaffold.1.g.vcf.gz combined_Scaffold.1.vcf-raw2.gz 30 LUSH_GenotypeGVCFs VERSION [LUSH_toolkit-GenotypeGVCFs-V1.1.0][1.1.0.24]
gvcf file is the compressed file. gvcf file open success. headlines:60 vcf file is the compressed file. vcf file open success. terminate called after throwing an instance of 'std::invalid_argument' what(): stoi Aborted (core dumped)
I would appreciate your help in overcoming this issue.
Best regards,
Anurag