Run startup.m before running any other scripts.
The omics-dashboard branch is for use with the new Omics Dashboard service
The master branch is for use with the old omics_analysis service.
Releases are done as snapshots of the master or omics-dashboard branch
Release names should include the data in ISO Format (YYYYMMDD) and the branch from which the release is derived.
| Script | Description |
|---|---|
| opls/main | Orthogonal Projection on Latent Structures |
| pca/main | Orthogonal Projection on Latent Structures |
| fix_spectra/fix_spectra | Baseline correction, alignment to reference, and zero regions |
| bin/main | Bin based quantification/deconvolution designed around dynamic adaptive binning |
| visualization/visualize_collections/main | Flexible spectral viewer |
| Directory | Purpose |
|---|---|
| common_scripts | Holds all matlab scripts used by more than one program |
| lib | Holds all libraries from other projects. Each library should be in its own subdirectory under lib and periodically updated. |