BioInf-Wuerzburg proovread issues

BioInf-Wuerzburg / proovread

PacBio hybrid error correction through iterative short read consensus

MIT License

60 stars 20 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Use for Nanopre data

#159 vegetableyu opened 6 months ago
0
Error in running proovread

#158 sschrstn opened 2 years ago
0
Is it possible to prevent proovread from cutting reads into smaller parts?

#157 ttbond closed 3 years ago
1
Blast exited with error: 0

#156 pcsearle closed 3 years ago
0
make ERROR

#155 Gaodelike closed 1 year ago
1
Can't allocate memory while bwa indexing

#154 yazuo0204 closed 4 years ago
1
out.trimmed.fq size 0. Need advise toadjust coverage?

#153 pomidorku closed 4 years ago
4
the result problem of proovread (the size of generated file is different)

#152 Hulanyue closed 4 years ago
2
Accidentally delete perl5

#151 Hulanyue closed 4 years ago
0
Binary '~/proovread/bin/../util/bwa/bwa-proovread' neither in PATH nor executable

#150 Hulanyue closed 4 years ago
0
Oxford Nanopore data

#149 akesarwani closed 4 years ago
3
SeqChunker: command not found

#148 Hulanyue closed 4 years ago
7
mkdir:permission denied

#147 Hulanyue closed 4 years ago
6
ERROR: Can't create '/path/to/proovread/lib/File'

#146 Hulanyue opened 4 years ago
6
fatal error: zlib.h: No such file or directory

#145 Hulanyue closed 4 years ago
2
Results problems

#144 q1134269149 closed 4 years ago
3
make: *** [Makefile:18: util] Error 1

#143 akesarwani closed 4 years ago
4
bwa failed: -1 issue

#142 Chris-Jun closed 4 years ago
1
Error in make sample

#141 martynakgajos closed 5 years ago
2
Proovread terminated with error

#140 sanjaysingh765 closed 5 years ago
8
xargs: perl: terminated by signal 9

#139 anu24s closed 5 years ago
1
switched to MIT License

#138 thackl closed 5 years ago
1
question about the chunk size

#137 xix017 closed 5 years ago
1
issue when trying to install proovread

#136 jupollet closed 5 years ago
3
Can this software deal with the nanopore data

#135 yuntwang closed 5 years ago
1
Proovread output, percentage of corrected bases

#134 TobiasJu closed 5 years ago
5
Will there be a new release soon?

#133 tseemann closed 6 years ago
1
error message

#132 joonlee311 closed 6 years ago
1
proovread on large datasets

#131 TobiasJu closed 5 years ago
4
Masked ratio always be 0.0%

#130 justdx closed 4 years ago
1
proovread dealing with long reads (>100Mbp)

#129 justdx closed 6 years ago
2
bwa-proovread

#128 Toral-Manvar closed 4 years ago
6
[siamaera] Blast exited with error: -1

#127 SC-Duan opened 6 years ago
0
Four questions about using proovread on Hst

#126 ZhangNestor opened 6 years ago
2
Document missing dependencies

#125 mmokrejs closed 6 years ago
1
'N' in proovread corrected sequences

#124 fantastycrane closed 6 years ago
6
threads

#123 DepledgeLab closed 4 years ago
3
Fix changing number of fields by SeqFilter

#122 greatfireball opened 6 years ago
6
SeqFilter output might cause warning messages and further correction steps than required

#121 greatfireball opened 6 years ago
0
Update develop with last master features (stubby reads)

#120 greatfireball closed 6 years ago
0
make: *** [util] Error 1

#119 jazberna1 closed 6 years ago
2
Allow whitespace in ref path (Fixes #116)

#118 ressy closed 6 years ago
1
errors with SeqChunker

#117 qiuyixmm closed 5 years ago
0
bam2cns doesn't handle spaces in the reference path

#116 ressy opened 6 years ago
6
the meaning of the sequence name of the output

#115 shenghuizhoucaas closed 6 years ago
1
Subreads per SMRT cell or combined

#114 faraz89 closed 6 years ago
1
Chunking and last output

#113 faraz89 closed 6 years ago
13
bam2cns unexpectedly returned (command calling samtools)

#112 RaulGoch closed 6 years ago
6
changing temp folder

#111 ghost closed 6 years ago
3
different results when run proovread on subreads independently and all combined

#110 Huanle closed 6 years ago
6