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BioInf-Wuerzburg
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proovread
PacBio hybrid error correction through iterative short read consensus
MIT License
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Use for Nanopre data
#159
vegetableyu
opened
6 months ago
0
Error in running proovread
#158
sschrstn
opened
2 years ago
0
Is it possible to prevent proovread from cutting reads into smaller parts?
#157
ttbond
closed
3 years ago
1
Blast exited with error: 0
#156
pcsearle
closed
3 years ago
0
make ERROR
#155
Gaodelike
closed
1 year ago
1
Can't allocate memory while bwa indexing
#154
yazuo0204
closed
4 years ago
1
out.trimmed.fq size 0. Need advise toadjust coverage?
#153
pomidorku
closed
4 years ago
4
the result problem of proovread (the size of generated file is different)
#152
Hulanyue
closed
4 years ago
2
Accidentally delete perl5
#151
Hulanyue
closed
4 years ago
0
Binary '~/proovread/bin/../util/bwa/bwa-proovread' neither in PATH nor executable
#150
Hulanyue
closed
4 years ago
0
Oxford Nanopore data
#149
akesarwani
closed
4 years ago
3
SeqChunker: command not found
#148
Hulanyue
closed
4 years ago
7
mkdir:permission denied
#147
Hulanyue
closed
4 years ago
6
ERROR: Can't create '/path/to/proovread/lib/File'
#146
Hulanyue
opened
4 years ago
6
fatal error: zlib.h: No such file or directory
#145
Hulanyue
closed
4 years ago
2
Results problems
#144
q1134269149
closed
4 years ago
3
make: *** [Makefile:18: util] Error 1
#143
akesarwani
closed
4 years ago
4
bwa failed: -1 issue
#142
Chris-Jun
closed
4 years ago
1
Error in make sample
#141
martynakgajos
closed
5 years ago
2
Proovread terminated with error
#140
sanjaysingh765
closed
5 years ago
8
xargs: perl: terminated by signal 9
#139
anu24s
closed
5 years ago
1
switched to MIT License
#138
thackl
closed
5 years ago
1
question about the chunk size
#137
xix017
closed
5 years ago
1
issue when trying to install proovread
#136
jupollet
closed
5 years ago
3
Can this software deal with the nanopore data
#135
yuntwang
closed
5 years ago
1
Proovread output, percentage of corrected bases
#134
TobiasJu
closed
5 years ago
5
Will there be a new release soon?
#133
tseemann
closed
6 years ago
1
error message
#132
joonlee311
closed
6 years ago
1
proovread on large datasets
#131
TobiasJu
closed
5 years ago
4
Masked ratio always be 0.0%
#130
justdx
closed
4 years ago
1
proovread dealing with long reads (>100Mbp)
#129
justdx
closed
6 years ago
2
bwa-proovread
#128
Toral-Manvar
closed
4 years ago
6
[siamaera] Blast exited with error: -1
#127
SC-Duan
opened
6 years ago
0
Four questions about using proovread on Hst
#126
ZhangNestor
opened
6 years ago
2
Document missing dependencies
#125
mmokrejs
closed
6 years ago
1
'N' in proovread corrected sequences
#124
fantastycrane
closed
6 years ago
6
threads
#123
DepledgeLab
closed
4 years ago
3
Fix changing number of fields by SeqFilter
#122
greatfireball
opened
6 years ago
6
SeqFilter output might cause warning messages and further correction steps than required
#121
greatfireball
opened
6 years ago
0
Update develop with last master features (stubby reads)
#120
greatfireball
closed
6 years ago
0
make: *** [util] Error 1
#119
jazberna1
closed
6 years ago
2
Allow whitespace in ref path (Fixes #116)
#118
ressy
closed
6 years ago
1
errors with SeqChunker
#117
qiuyixmm
closed
5 years ago
0
bam2cns doesn't handle spaces in the reference path
#116
ressy
opened
6 years ago
6
the meaning of the sequence name of the output
#115
shenghuizhoucaas
closed
6 years ago
1
Subreads per SMRT cell or combined
#114
faraz89
closed
6 years ago
1
Chunking and last output
#113
faraz89
closed
6 years ago
13
bam2cns unexpectedly returned (command calling samtools)
#112
RaulGoch
closed
6 years ago
6
changing temp folder
#111
ghost
closed
6 years ago
3
different results when run proovread on subreads independently and all combined
#110
Huanle
closed
6 years ago
6
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