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BioJulia
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Kmers.jl
In development: Kmer types and methods for julia
MIT License
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Correct some small typos in the docs
#36
camilogarciabotero
closed
8 months ago
0
Breaking changes for v1
#35
jakobnissen
opened
8 months ago
8
SpacedKmer bug for 2bit sequences
#34
cjprybol
opened
1 year ago
0
Fix iterator constructor and other failing tests
#32
cjprybol
closed
1 year ago
6
Kmers.jl is unable to comply with `BioSequences.has_interface` as currently implemented
#33
cjprybol
closed
1 year ago
2
consider removing kmer/sequence type inference from strings in favor of generalized version in BioSequences
#31
cjprybol
opened
1 year ago
0
Add docstrings and update docs
#30
cjprybol
closed
1 year ago
4
Better conversion from 2 to 4 bit nucleic kmers
#29
TransGirlCodes
opened
1 year ago
0
Fix hashing
#28
TransGirlCodes
opened
1 year ago
0
Add Unsafe trait object
#27
jakobnissen
closed
2 years ago
3
Resolve ambiguity error Kmer()
#26
jakobnissen
closed
2 years ago
1
Add constructors
#25
jakobnissen
closed
2 years ago
1
Add translation of kmers
#24
jakobnissen
closed
2 years ago
1
Roadmap to release
#23
jakobnissen
opened
2 years ago
1
Fix minor bugs
#22
jakobnissen
closed
2 years ago
1
Small bugfixes
#21
jakobnissen
closed
2 years ago
0
Add reverse translation
#20
jakobnissen
closed
2 years ago
3
Proposal: Implement reverse translation
#19
jakobnissen
closed
2 years ago
1
TagBot trigger issue
#18
JuliaTagBot
closed
2 years ago
1
Proposal: Allow zero-length kmers
#17
jakobnissen
opened
2 years ago
5
Kmer Slicing
#16
TransGirlCodes
closed
2 years ago
3
Various small issues
#15
jakobnissen
closed
2 years ago
1
Missing contructors
#14
jakobnissen
closed
2 years ago
5
Should EveryKmer and SpacedKmers be merged?
#13
TransGirlCodes
opened
2 years ago
4
Micro-optimise the hell out of this package.
#12
TransGirlCodes
opened
2 years ago
0
Should gaps be permitted in Kmers?
#11
TransGirlCodes
closed
2 years ago
9
CompatHelper: add new compat entry for BioSequences at version 2, (keep existing compat)
#10
github-actions[bot]
closed
2 years ago
0
Implement translate for codons
#9
jakobnissen
closed
2 years ago
0
Merge code for Kmer type from BioSequences to this package
#8
TransGirlCodes
closed
2 years ago
3
⚠️ Is this package still maintained? ⚠️
#7
jakobnissen
closed
3 years ago
3
Contributing files rollout
#6
TransGirlCodes
closed
3 years ago
0
WIP: Foundational code from Bio.jl
#5
kdm9
closed
2 years ago
2
Implement a Cuckoo filter
#4
kdm9
closed
2 years ago
3
Implement a Counting Quotient Filter
#3
kdm9
closed
2 years ago
1
Added kmer types and aliases.
#2
TransGirlCodes
closed
7 years ago
1
Short and/or long k-mer types.
#1
bicycle1885
closed
2 years ago
4