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BioPsyk
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cleansumstats
Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
https://biopsyk.github.io/metadata/#!/form/cleansumstats
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Update 1KGP AF to latest release
#422
pappewaio
opened
4 hours ago
0
Develop
#421
pappewaio
closed
3 weeks ago
0
Issue 418
#420
pappewaio
closed
4 weeks ago
0
Issue 418
#419
pappewaio
closed
1 month ago
0
add flag for image image
#418
pappewaio
closed
1 month ago
0
Issue 411
#417
pappewaio
closed
3 months ago
0
update citation information
#416
pappewaio
opened
3 months ago
0
Develop
#415
pappewaio
closed
4 months ago
0
Issue missing variants
#414
pappewaio
closed
4 months ago
0
Issue 412
#413
pappewaio
closed
4 months ago
0
Make raw always forward the raw metafile
#412
pappewaio
closed
4 months ago
1
files in out_dbsnp folder have All_20180418 prefix regardless of which dbSNP version is actually used
#411
ofrei
closed
3 months ago
3
Unhandled exception (crash) in one of the last steps of cleansumstats pipeline
#410
ofrei
closed
6 months ago
3
Z score missing
#409
pappewaio
closed
7 months ago
1
Develop
#408
pappewaio
closed
7 months ago
0
minor-fix-of-dbsnp-prepare-filter
#407
pappewaio
closed
7 months ago
0
Develop
#406
pappewaio
closed
7 months ago
0
resolves the e2e issues
#405
pappewaio
closed
7 months ago
0
Develop
#404
pappewaio
closed
7 months ago
0
add a feature that just forwards stats_EffectiveN if it exists.
#403
pappewaio
opened
7 months ago
1
Issue 372
#402
pappewaio
closed
7 months ago
0
updating to dbsnp b156
#401
pappewaio
closed
7 months ago
0
Develop
#400
pappewaio
closed
7 months ago
0
Issue 389
#399
pappewaio
closed
7 months ago
0
Update README.md
#398
pappewaio
closed
9 months ago
0
Develop
#397
pappewaio
closed
9 months ago
0
Ncase in output metafile but not in header
#396
pappewaio
closed
9 months ago
0
Issue 393
#395
pappewaio
closed
1 year ago
0
Issue 393
#394
pappewaio
closed
1 year ago
0
add af inference from case control specific N and AF
#393
pappewaio
closed
1 year ago
1
Issue 280
#392
pappewaio
closed
1 year ago
0
Issue 390
#391
pappewaio
closed
1 year ago
0
post-process minor allele flipping
#390
pappewaio
closed
1 year ago
0
update singularity variable
#389
pappewaio
closed
7 months ago
3
Issue 387
#388
pappewaio
closed
1 year ago
0
Add post-process instructions for how to add columns after the cleaning.
#387
pappewaio
closed
1 year ago
0
resolves issue #385
#386
pappewaio
closed
1 year ago
0
Failed mapping to dbsnp when chr:pos is only present in Markername
#385
pappewaio
closed
1 year ago
0
Parsing CHR:POS_A1_A2 columns
#384
ofrei
closed
1 year ago
3
Issue 382
#383
pappewaio
closed
1 year ago
0
pipeline_info/pipeline_dag.svg file has no access for group and other
#382
ofrei
closed
1 year ago
1
Post-processing step for GRCh37 should filter missing values
#381
ofrei
closed
4 months ago
0
resolves #379
#380
pappewaio
closed
1 year ago
0
suspected flip bug
#379
pappewaio
closed
1 year ago
0
Develop
#378
pappewaio
closed
1 year ago
0
Adding doi in readme
#377
pappewaio
closed
1 year ago
0
Develop
#376
pappewaio
closed
1 year ago
0
citation file and version bump
#375
pappewaio
closed
1 year ago
0
Release and Citation
#374
pappewaio
closed
1 year ago
0
Retain palindromic SNPs
#373
Ararder
closed
1 year ago
1
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