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Bioconductor
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BSgenomeForge
Tools to forge BSgenome data packages
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Create new custom genome for BSgenome
#44
ckuanglim85
opened
1 month ago
0
BSgenomeForge from Ensembl genome
#43
junjunxy
closed
4 months ago
4
Improve error message in get_circ_seqs_for_unregistered_assembly_or_genome()
#42
hpages
opened
5 months ago
0
Replace ambiguities from NCBI assembly
#41
JirkaMP
closed
5 months ago
5
assembly_has_no_assembled_molecules
#40
ifanirene
closed
5 months ago
3
Creating a BSgenome data package from a NCBI assembly - Virus
#39
JirkaMP
closed
5 months ago
0
forgeBSgenomeDataPkg: not a registered NCBI assembly or UCSC genome error
#38
sadikmz
closed
5 months ago
4
Fix typo
#37
jeroen
closed
7 months ago
1
Error in .subsetTwobitFile when using forgeBSgenomeDataPkg for a custom genome
#36
vmurigneu
closed
10 months ago
1
[macOS] Two tests fail: forgeBSgenomeDataPkgFromNCBI and forgeBSgenomeDataPkgFromUCSC
#35
barracuda156
closed
11 months ago
23
Package level manpage
#33
kakopo
closed
1 year ago
7
Minor edits to vignette and man pages
#32
kakopo
closed
1 year ago
2
Preparing BSgenomeForge for submission
#31
kakopo
closed
1 year ago
0
Add vignette for BSgenomeForge
#30
kakopo
closed
1 year ago
0
Prepare the package for submission, and submit
#29
hpages
closed
1 year ago
10
Do not download genomic sequences again if already downloaded
#28
kakopo
closed
1 year ago
0
Minor edits to unit tests for BSgenomeForge:::.get_circ_seqs()
#27
kakopo
closed
1 year ago
0
First unit test commit
#26
kakopo
closed
1 year ago
1
forgeBSgenomeDataPkgFromNCBI() enhancement: do not download genomic sequences again if already downloaded
#25
hpages
closed
1 year ago
5
Write package vignette
#24
hpages
closed
1 year ago
14
Implement, export, and document forgeBSgenomeDataPkgFromUCSC()
#23
hpages
closed
1 year ago
1
Refine handling of 'circ_seqs' argument.
#22
kakopo
closed
1 year ago
0
forgeBSgenomeDataPkgFromNCBI() now raises an error if 'circ_seqs' is a mix of assembled molecules with non-assembled molecules
#21
kakopo
closed
1 year ago
0
Programmatically obtain the assembly name from NCBI
#20
kakopo
closed
1 year ago
6
forgeBSgenomeDataPkgFromNCBI() should raise an error if 'circ_seqs' is a mix of assembled molecules with non-assembled molecules
#19
kakopo
closed
1 year ago
4
Try to improve BSgenomeForge:::abbreviate_organism_name()
#18
hpages
opened
1 year ago
3
Add unit tests for BSgenomeForge:::.get_circ_seqs()
#17
hpages
closed
1 year ago
8
forgeBSgenomeDataPkgFromNCBI() enhancement: Refine handling of 'circ_seqs' argument
#16
hpages
closed
1 year ago
9
Add 'circ_seqs' argument to forgeBSgenomeDataPkgFromNCBI()
#15
kakopo
closed
1 year ago
16
forgeBSgenomeDataPkgFromNCBI() enhancement: Programmatically obtain the assembly name from NCBI
#14
hpages
closed
1 year ago
3
Add 'circ_seqs' argument to forgeBSgenomeDataPkgFromNCBI()
#13
hpages
closed
1 year ago
8
Implement, export, and document forgeBSgenomeDataPkgFromNCBI()
#12
kakopo
closed
1 year ago
17
Implement, export, and document forgeBSgenomeDataPkgFromNCBI()
#11
hpages
closed
1 year ago
8
Add "NCBI_BSgenome_datapkg" package template to BSgenomeForge
#10
kakopo
closed
1 year ago
2
Add "NCBI_BSgenome_datapkg" package template to BSgenomeForge and try createPackage() on it
#9
hpages
closed
1 year ago
3
Add 'assembly_accession' argument to fastaTo2bit()
#8
kakopo
closed
1 year ago
10
Add 'assembly_accession' argument to fastaTo2bit()
#7
hpages
closed
1 year ago
3
Implement basic functionality for fastaTo2bit()
#6
kakopo
closed
1 year ago
9
Implement, export, and document, a utility function for converting a file from FASTA to 2bit
#5
hpages
closed
1 year ago
9
Implement, export, and document downloadGenomicSequencesFromUCSC()
#4
Simplecodez
closed
1 year ago
11
downloadGenomicSequencesFromNCBI
#3
Priceless-P
closed
1 year ago
17
Implement, export, and document downloadGenomicSequencesFromUCSC()
#2
hpages
closed
1 year ago
29
Implement, export, and document downloadGenomicSequencesFromNCBI()
#1
hpages
closed
1 year ago
3